rhondabacher

Escort

ISMB2019_SingleCellTutorial

Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omics Analysis

Median-Ratio-Normalization

methylscaper

scaffold

scEqualization-Paper

All analysis codes and scripts for the manuscript "Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization"

scLANE

Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

SCnorm

Normalization for single cell RNA-seq data

SegReg

SegReg: Breakpoint analysis of time course expression data

Trendy

Trendy: Segmented regression analysis of expression dynamics for high-throughput ordered profiling experiments

rhondabacher/SCnorm

Normalization for single cell RNA-seq data

rhondabacher/ISMB2019_SingleCellTutorial

Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omics Analysis

rhondabacher/Trendy

Trendy: Segmented regression analysis of expression dynamics for high-throughput ordered profiling experiments

rhondabacher/Median-Ratio-Normalization

rhondabacher/scaffold

rhondabacher/methylscaper

rhondabacher/Escort

rhondabacher/scEqualization-Paper

All analysis codes and scripts for the manuscript "Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization"

rhondabacher/scLANE

Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

rhondabacher/SegReg

SegReg: Breakpoint analysis of time course expression data

rhondabacher/Enrich_shiny

R/shiny app for enrichment analysis

rhondabacher/JSM2018_ShortCourseMaterials

Tutorials and code for JSM 2018 short course on statistical methods for single-cell RNA-seq analysis

rhondabacher/OscillationViz

Explore simulated cycling gene behavior

rhondabacher/rhondabacher

rhondabacher/RobotNeuralDiffPaper

All analysis code and data files for analysis in the minute scale robot RNA-seq manuscript.

rhondabacher/SCPattern

Identify and characterize expression changes in a single cell RNA-seq experiment with ordered conditions

rhondabacher/scRNAseq_Analysis

rhondabacher/scSpatialReconstructCompare-Paper

All analysis code and data files for analysis in manuscript on the comparison of UMI and full-length scRNA-seq protocols for spatial analysis of the liver lobule.

rhondabacher/shiny-server

rhondabacher/TimeCourse-plot

Shiny app for Li-Fang to explore time-course datasets

rhondabacher/TimeCourse-plots-general

General time-course Shiny app

rhondabacher/Trendy-Tutorials

Tutorials for using Trendy

rhondabacher/TrendyServer

Run Trendy through Shiny server.

rhondabacher/WaveCrest