rhshah
Computational Biologist working to build/execute strategies for in-depth analysis of NGS data
@mskcc @msk-access @mskcc-omics-workflows New York, NY
Pinned Repositories
book
Compiled and pretty version of labs
CAW
Cancer Analysis Workflow: a complete open source pipeline to detect somatic variants from WGS data
cutadapt
cutadapt removes adapter sequences from sequencing reads
detect_hotspot_sv
Filtering Delly Raw results for Hotspots
iAnnotateSV
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
iCallSV
A Framework to call Structural Variants from NGS based datasets
IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
IMPACT-SV
Detection of Structural Variants Using Delly and Annotation using dRanger
targetSeqView
Visualize next generation sequencing reads over putative structural variants
rhshah's Repositories
rhshah/IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
rhshah/iCallSV
A Framework to call Structural Variants from NGS based datasets
rhshah/iAnnotateSV
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
rhshah/CAW
Cancer Analysis Workflow: a complete open source pipeline to detect somatic variants from WGS data
rhshah/rnaseq-cfu-e-2018
Clustering and differential analysis of CFU-E cells with different conditions
rhshah/SVPV
Structural Variant Prediction Viewer
rhshah/aws-batch-genomics
Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.
rhshah/azure-genomics-poc
POC for Genomics on Azure
rhshah/basicfiltering
Basic filtering scripts for various mutation calling tools
rhshah/comut
CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
rhshah/CSF_2018_Scripts
Contains Scripts Created for Plotting results of CSF project
rhshah/foam
A personal knowledge management and sharing system for VSCode
rhshah/genotype_variants
Project to genotype SNV, INDEL and SV.
rhshah/github-readme-stats
:zap: Dynamically generated stats for your github readmes
rhshah/github-stats
rhshah/Halve
Stylish Two-Column Jekyll Theme
rhshah/igv.js-flask
Example project for integrating igv.js and flask
rhshah/lorca
Build cross-platform modern desktop apps in Go + HTML5
rhshah/Marianas
Software for processing molecular barcoding (UMI)-based NGS data
rhshah/Miscellaneous
Multiple DataProcessing scripts
rhshah/mutation_modelling
This repo has scripts that helps to generate features for modeling mutations
rhshah/notifiers
The easy way to send notifications
rhshah/PIe
Precision Informatics engine (PIe)
rhshah/presentations
Repository of all my public presentations
rhshah/Project_BINF702
Project for BINF702
rhshah/reconCNV
visualize CNV data from targeted capture based sequencing data
rhshah/rhshah
rhshah/rhshah.github.io
About Me
rhshah/sourcerer-app
🦄 Sourcerer app makes a visual profile from your GitHub and git repositories.
rhshah/sv_annotator