rhysnewell
Bioinformatics Software Engineer @ Microba. PhD in Bioinformatics at Centre for Microbiome Research, QUT
Microba LifeSciencesSydney, Australia
Pinned Repositories
annembed
data embedding based on approximate nearest neighbour
aviary
A hybrid assembly and MAG recovery pipeline (and more!)
ChIP-R
Assessing the reproducibility of proccessed ChIP-seq peaks
CoverM
Read coverage calculator for metagenomics
fftconvolve
Rust implementations of Fast Fourier Transform convolution and correlation for n-dimensional arrays
flight
Python module handling calls to UMAP and HDBSCAN for Lorikeet and Rosella
ftms_mapper
FT-MS + metabolomics playground
Lorikeet
Strain resolver for metagenomics
rosella
Metagenomic Binning Algorithm
rust-cargo-musl-action
rhysnewell's Repositories
rhysnewell/aviary
A hybrid assembly and MAG recovery pipeline (and more!)
rhysnewell/Lorikeet
Strain resolver for metagenomics
rhysnewell/fftconvolve
Rust implementations of Fast Fourier Transform convolution and correlation for n-dimensional arrays
rhysnewell/rosella
Metagenomic Binning Algorithm
rhysnewell/ChIP-R
Assessing the reproducibility of proccessed ChIP-seq peaks
rhysnewell/flight
Python module handling calls to UMAP and HDBSCAN for Lorikeet and Rosella
rhysnewell/rust-cargo-musl-action
rhysnewell/CoverM
Read coverage calculator for metagenomics
rhysnewell/rhysnewell.github.io
Personal blog and profile website
rhysnewell/annembed
data embedding based on approximate nearest neighbour
rhysnewell/bioconda-recipes
Conda recipes for the bioconda channel.
rhysnewell/CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
rhysnewell/doctave
A batteries-included developer documentation site generator
rhysnewell/drawio-diagrams
Diagrams for draw.io
rhysnewell/finch-rs
A genomic minhashing implementation in Rust
rhysnewell/galah
More scalable dereplication for metagenome assembled genomes
rhysnewell/Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
rhysnewell/gtdb_genome_filter
Small script to parse and filter out genomes in the GTDB
rhysnewell/kingfisher-download
Easier download/extract of FASTA/Q read data from the ENA, NCBI, AWS or GCP.
rhysnewell/metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
rhysnewell/notebooks
rhysnewell/personal_configs
A collection of personal config files for various scenrios (Shell, SSH, etc.)
rhysnewell/profile
hugo theme for github splash page
rhysnewell/pynndescent
A Python nearest neighbor descent for approximate nearest neighbors
rhysnewell/rhysnewell
Config files for my GitHub profile.
rhysnewell/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
rhysnewell/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
rhysnewell/spacegraphcats
Indexing large assembly graphs -- remember, in space, no one can hear you miao!
rhysnewell/umap
Uniform Manifold Approximation and Projection
rhysnewell/UnityTools
A small collection of tools that multiple projects make use of.