Issues
- 7
Maize genome in riboviz format
#485 opened by NastiaSkuba - 0
- 1
generateStatsFigs terminating when running vignettes
#483 opened by hector3500 - 0
- 1
- 1
- 2
Fix errors in bam_to_h5.R
#479 opened by ewallace - 0
Display figshare doi
#478 opened by ewallace - 25
generateStatsFigs on human ribose data is taking too long and then terminated with an error "Error in 2:end_reads_pos_subset : argument of length 0"
#472 opened by Pradeep-ICR - 0
- 2
- 24
- 40
Refactor codon pairs scripts
#436 opened by mikej888 - 11
Edit the code in codon_feature_analysis.R to give the whole window size not only position 0
#470 opened by Eldonoho99 - 1
- 1
Upgrade Nextflow version to enable dsl1 flag
#467 opened by Maberuiz - 5
Flag for nextflow dsl 1
#466 opened by ewallace - 7
Upgrade Eddie documentation, 2022 edition
#460 opened by ewallace - 7
- 1
Write contributor guide
#459 opened by ewallace - 1
- 4
- 0
- 1
document num_processes better
#464 opened by ewallace - 1
Fix test documentation
#461 opened by ewallace - 0
h5ls does not give a full list of gene names
#458 opened by acope3 - 2
Investigate test_bam_to_h5.R and test_bam_to_h5_functions.R warnings for rhdf 2.34.0
#412 opened by mikej888 - 0
Point install page to container instructions
#457 opened by ewallace - 6
Using riboviz on Amarel
#453 opened by acope3 - 6
Update developer documentation
#443 opened by mikej888 - 5
- 0
More on Eddie
#414 opened by ewallace - 2
Document how downloading results and moving them around may affect the shiny visualizations
#430 opened by kavousan - 1
- 1
Change RiboViz to riboviz
#421 opened by mikej888 - 2
Clarify naming convention for UTRs
#451 opened by IsabelBirds - 0
- 2
- 2
- 1
- 1
Fix file name bug in `run_shiny_server.R`
#439 opened by mikej888 - 1
- 25
Update file names in documentation and code
#411 opened by 3mma-mack - 7
Update documentation of ribogrid data by position and length to riboviz_outputs.md
#426 opened by ewallace - 2
- 1
Check R code to replace all uses of gather() & spread() functions with pivot_*() equivalents
#415 opened by FlicAnderson - 8
Downloading results and moving them around may affect the shiny visualizations
#410 opened by JOl-lN - 0
Deprecate or document rpf parameter
#429 opened by mikej888 - 0
Outputting a file that indicates the periodicity of reads of different length.
#427 opened by ewallace - 7
Workflow does not complete if `count_reads` is `true` but `run_static_html` is `false`
#416 opened by mikej888