ricardoi

Microbial and virome network analysis, developing tools and frameworks for analysis of complex datasets.

Oregon State UniversityOregon

Pinned Repositories

hoboR
Package to process hobo weather stations
Language:R2 2 20
cheatsheets
temp webpages of personal cheatsheet
Language:HTML0 1 01
CQLS
Language:Shell1 1 01
INApreliminary
Language:R10
LeafSpotArea
An interface for the image processing program ImageJ, which allows a rapid digital image analysis for particle sizes.
Language:R1 0 00
peruvian_potato_virome
Peruvian Potato Viroeme
Language:R2 1 00
peruvianpotato_np
Code to get climate variables from Nasa Power
Language:R2 1 00
REEU_intern23
REEU Summer Intership Material
Language:R1 1 01
TranslatingViromes
Repository to keep track of scripts and figures generated for translatting virome manuscript
Language:R0 1 01
virDB
virus database beta release
Language:R4 1 01

ricardoi's Repositories

ricardoi/peruvian_potato_virome
Peruvian Potato Viroeme
Language:R2 1 00
ricardoi/peruvianpotato_np
Code to get climate variables from Nasa Power
Language:R2 1 00
ricardoi/INApreliminary
Language:R10
ricardoi/machine_learning_ld
This is a repository for code based on machine Learning with R
Language:R12
ricardoi/ABCDGraphGenerator.jl
Artificial Benchmark for Community Detection (ABCD) - A Fast Random Graph Model with Community Structure
ricardoi/Bergm
Set of Tools to Analyse Bayesian Exponential Random Graph Models
ricardoi/BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
ricardoi/CCRI_AfricaSP
This is a modification of the Cropland Connectivity Risk Index to infer the sweetpotato populations and the samples collected for the sweetpotato virome Analysis in Africa
Language:R
ricardoi/collaborations
This is a site to share code with collegues
Language:R
ricardoi/dynwrap
A common data format and inference environment for single-cell trajectories 📦
ricardoi/Exit-Seminar_ABR
Documents for the exit seminar
ricardoi/foofactors
Make Factors Less Aggravating
ricardoi/gggenes
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
ricardoi/idnet
Identity networks and distributions and heatplots
Language:HTML
ricardoi/INA
R package for impact network analysis (INA)
ricardoi/lakekivu
Language:HTML
ricardoi/Laurel-Wilt-Agent-Based-Model-
agent based model work
Language:R0 0
ricardoi/machina
This is an autoformating setup
Language:Shell
ricardoi/nasapower
NASA POWER Global Meteorology, Surface Solar Energy and Climatology Data Client for R
ricardoi/NextDenovo
Fast and accurate de novo assembler for long reads
ricardoi/PhONA
ricardoi/research-compendium-website
A template for creating a research compendium for a website interface
ricardoi/SDS375
SDS 375 Data Visualization in R
ricardoi/test_changed-named
This is a test
ricardoi/viga_scaffolder
Language:Shell
ricardoi/ViNA_for_CABANA
Capacity Building of Bioinformatic in Latin America (CABANA) Workshop in San Jose, Costa Rica, March 2-4, 2020.
Language:HTML
ricardoi/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
ricardoi/virusdetect-hpg
virus detect command line at the hipergator
Language:Perl
ricardoi/virusdetect_hpg
This is a repo to run VirusDetect on the hipergator @UF
Language:Shell
ricardoi/youtube-dl
Command-line program to download videos from YouTube.com and other video sites