Pinned Repositories
acedb
the Sanger Institute version of the venerable genome database system
gaffer
a GFA toolkit
hash10x
a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
hexamer
find likely coding segments in DNA using composition-normalised hexamer tables
modimizer
a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
ONEsv
pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
phynder
likelihood calculations over a tree to support ancient DNA Y chr analysis and more
pyramus
rotate
simple program to rotate a circular sequence to start at a given position or string
richarddurbin's Repositories
richarddurbin/pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
richarddurbin/modimizer
a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
richarddurbin/hash10x
a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
richarddurbin/hexamer
find likely coding segments in DNA using composition-normalised hexamer tables
richarddurbin/rotate
simple program to rotate a circular sequence to start at a given position or string
richarddurbin/gaffer
a GFA toolkit
richarddurbin/phynder
likelihood calculations over a tree to support ancient DNA Y chr analysis and more
richarddurbin/ONEsv
richarddurbin/acedb
the Sanger Institute version of the venerable genome database system
richarddurbin/pyramus
richarddurbin/darwintreeoflife.data
Interim data for the Darwin Tree of Life Project
richarddurbin/DAS-SPEC
The Dagstuhl Assembly Specification Language
richarddurbin/gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
richarddurbin/RefVariationTaskTeam
Work on data models and APIs for graph structures that represent the human reference genome plus common human genetic variants. Includes mapping to a reference genome, and standardization of the mechanism for referring to variants.
richarddurbin/schemas
The Data Working Group concentrates on data representation, storage, and analysis, including working with platform development partners and industry leaders to develop standards that will facilitate interoperability.
richarddurbin/sga
de novo sequence assembler using string graphs
richarddurbin/vg
tools for working with variation graphs