/Amborella_ENM

This repository contains scripts for processing and analyzing data associated with "Linking genome signatures of selection and adaptation in the non-model angiosperm Amborella" published in Current Opinion in Plant Biology, 2018 (https://doi.org/10.1016/j.pbi.2018.04.003)

Primary LanguageR

Climate.R involves getting raw bioclimatic data.
The raw files are far too large to put on github. Subsequent scripts can be run without the user running Climate.R.

Run:

  1. Coordinates.R
  2. SweeD.R
  3. Allele_Freq.R
  4. Correlation.R

All input, intermediate, and output files are in the repository.

Throughout the scripts, the user will need to replace "/Users/richiehodel/Desktop/" with the directory/path where the user puts the repository "Amborella_ENM"