rickhelmus/patRoon

Issues

• MetFrag Score Calculation - How are they calculated in patRoon?

  #114 opened 4 months ago by Theodoralee27
  5

• Advice for validating non-target analysis with known compounds

  #113 opened 5 months ago by akogler
  1

• Report generation occasionally fails

  #111 opened 6 months ago by MK3491
  10

• findFeatures Error - Error in if (!recentFFM) settings <- c(settings, `-algorithm:epd:masstrace_snr_filtering` = boolToChr(traceSNRFiltering)) : missing value where TRUE/FALSE needed

  #112 opened 6 months ago by Theodoralee03
  4

• Error: report with compoundsConsensus fails

  #110 opened 6 months ago by LeonSaal
  1

• Swath acquisition

  #109 opened 8 months ago by Boris-Droz
  4

• Request: Reduce cache size

  #98 opened a year ago by LeonSaal
  2

• merge generateCompounds from different tools

  #108 opened 8 months ago by Boris-Droz
  6

• Error: plotVenn() with featureGroupsComparison

  #107 opened 8 months ago by LeonSaal
  8

• Error: Finding features using XCMS

  #104 opened 9 months ago by LeonSaal
  4

• error with generateCompounds( ) - could not run MetFrag

  #106 opened 9 months ago by Theodoralee03
  4

• Using data processing code with already annotated csv file

  #105 opened 10 months ago by VR-13
  1

• Selection of several adducts

  #96 opened 10 months ago by Boris-Droz
  3

• Suggestion: 'conc'-column in newProject()

  #102 opened 10 months ago by LeonSaal
  2

• Handbook: Inconsistency for labelled Isotopes

  #101 opened 10 months ago by LeonSaal
  1

• Error: newProject()/Tp Screening unable to add parent suspect list

  #100 opened 10 months ago by PiaSchuenemann
  5

• Error: graphics device error in Docker

  #97 opened a year ago by LeonSaal
  4

• Filtering MS/MS Peaks with Characteristic Fragment Ions

  #95 opened a year ago by Jasmin-Zeng
  5

• Load a previous group features list

  #94 opened a year ago by Boris-Droz
  2

• Error: Visualization: plotVenn(): diagram cut off

  #65 opened a year ago by LeonSaal
  2

• MetaClean package deprecated

  #81 opened a year ago by tsufz
  3

• Does compare/consensus on feature groups only work for fGroups based on the exact same data files (anaInfo)?

  #90 opened a year ago by bhc928
  6

• Error: Docker RStudio-server, unable to connect to service

  #93 opened a year ago by LeonSaal
  2

• MS2Quant: "Error in if (fingerprints != "") { : the condition has length > 1"

  #92 opened a year ago by drewszabo
  2

• MetFrag not functionning with java versions problem being compiled by a more recent version of the Java Runtime (52.0 and 55.0)

  #91 opened a year ago by EmmEys
  1

• Componentization

  #71 opened a year ago by CorinaMeyer
  6

• Updated Docker image

  #70 opened a year ago by akogler
  6

• Docker: request canceled while waiting for connection

  #75 opened a year ago by tellyshia
  2

• Error in (function (classes, fdef, mtable)

  #83 opened a year ago by TantawiOmar
  2

• install error

  #86 opened a year ago by mingw86
  3

• Possibility for feature group filtering based on replicate groups and detection frequencies?

  #89 opened a year ago by bhc928
  2

• loadMSLibrary "Error: stod"

  #88 opened a year ago by drewszabo
  2

• generateFormulas "Object 'PLID' not found" with SIRIUS and GenForm

  #87 opened a year ago by drewszabo
  5

• Formula generation with multiple adducts and with sirius decomp

  #85 opened 2 years ago by joules-pro
  1

• Request: 'in memory'-option

  #84 opened 2 years ago by LeonSaal
  3

• Installation failure

  #76 opened 2 years ago by Emma-Palm
  2

• windows install

  #67 opened 2 years ago by dgcovell
  2

• Suggestion: newProject(): Save UI-Input as configuration file

  #61 opened 2 years ago by LeonSaal
  2

• Errors in DA formula calculation and during loading MSP libraries

  #72 opened 2 years ago by MK3491
  4

• Update link to OpenBabel

  #82 opened 2 years ago by tsufz
  1

• Question: reporting: Increase resolution of plots

  #64 opened 2 years ago by LeonSaal
  2

• generateFormulas() and generate Compounds() errors

  #58 opened 2 years ago by SivanXW
  2

• Error: newProject(): Loading suspect list for one ionization

  #69 opened 2 years ago by LeonSaal
  1

• Error: selectIons() - could not find chromPeaks

  #68 opened 2 years ago by LeonSaal
  1

• Error: Modifying Docker Image

  #66 opened 2 years ago by LeonSaal
  2

• Suggestion: newProject(): Add remove button to Analyses/Generate analysis information/Load in script

  #60 opened 2 years ago by LeonSaal
  3

• Error: newProject(): General/Insert code into/Current file does not work

  #62 opened 2 years ago by LeonSaal
  1

• MetaClean labels flipped

  #59 opened 2 years ago by LeonSaal
  1

• Feature Suggestion: Import SIRIUS results (formula & compound)

  #57 opened 2 years ago by drewszabo
  1

• isolatePrec argument filtering MSMS peaks

  #56 opened 2 years ago by drewszabo
  3