This repository is part of this paper: Schuster R, Martin TG, Arcese P (2014) Bird Community Conservation and Carbon Offsets in Western North America. PLoS ONE 9(6): e99292. doi: 10.1371/journal.pone.0099292 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0099292
It includes R code (DEJU_BUGS.r) and required data files to test and account for residual spatial autocorrelation of occupancy models fit with the R package unmarked. It also has code to assess model goodness of fit using AUC.