Pinned Repositories
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
gEpiCount
GPU accelerated genome-wide scan of Boolean epistatic interactions
mstknn
Clustering by graph difference between Minimum Spanning Tree and kNN augmented with paracliques
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
reactable
Interactive data tables for R
demultiplex
Demultiplexing pipeline for sequencing data
sp-engine
rifius's Repositories
rifius/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
rifius/mstknn
Clustering by graph difference between Minimum Spanning Tree and kNN augmented with paracliques
rifius/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
rifius/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
rifius/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
rifius/gEpiCount
GPU accelerated genome-wide scan of Boolean epistatic interactions