Pinned Repositories
dry-guide
parisodlab.github.io
snakeGATK4_v2
assembly-stats
Assembly statistic visualisation
ComparativeGenomics
A pipeline for processing data in a comparative genomics project.
Diabroticum-Metatranscriptome
EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
snakeDeepvariant
snakemake Deepvariant
TEPID-fix
UNIX-notes
Tips and tricks for advanced UNIX user
rimjhimroy's Repositories
rimjhimroy/ComparativeGenomics
A pipeline for processing data in a comparative genomics project.
rimjhimroy/Diabroticum-Metatranscriptome
rimjhimroy/EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
rimjhimroy/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
rimjhimroy/snakeDeepvariant
snakemake Deepvariant
rimjhimroy/snakeGATK4
rimjhimroy/snakeTEPID
rimjhimroy/TEPID-fix
rimjhimroy/Transposon80-80-80
Annotate transposable elements using the 80-80-80 rule (Wicker et al. 2007)
rimjhimroy/katacoda_test
rimjhimroy/NGS_Snakemake
rimjhimroy/plastid_sequence_analysis
Analysis of plastid sequence
rimjhimroy/popgen
Population genetics analyses
rimjhimroy/popgen-notes
Population genetics notes
rimjhimroy/r-conda
R and RStudio via conda packages in repo2docker
rimjhimroy/repeat_files
rimjhimroy/residual-tetrasomy
For characterization of residually tetrasomic regions
rimjhimroy/rimjhimroyblogs.github.io
:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.
rimjhimroy/rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
rimjhimroy/SnakeGATK
rimjhimroy/snp-calling-scripts
rimjhimroy/So2
So2 TE Bioinformatic ressources -- Parisot et al. 2020
rimjhimroy/stacks_workflow
RADseq workflow built around STACKS
rimjhimroy/SummerSchool_2023_Moeko
rimjhimroy/TE_ManAnnot
Accompanying repository for our publications on manual curation methods for Transposable Elements.
rimjhimroy/TEPID-run
rimjhimroy/TEscripts
Scripts used in Transposable element annotation
rimjhimroy/unix-first-steps-training
SIB First Steps with UNIX course
rimjhimroy/useful_scripts
rimjhimroy/wgd
Python package and CLI for whole-genome duplication related analyses