Pinned Repositories
bioinfo-scripts
Collection of small scripts for bioinformatics tasks
dorado-snake-nci
snakemake pipeline for duplex basecalling with dorado on NCI
nanopore-biosecurity-workshop-2022
long-read amplicon consensus reconstruction tutorial in nanopore biosecurity workshop ANU 2022
Pst104EGenomeBiology
snakemake-freebayes-variant-calling
A snakemake-automated pipeline that performs short-read mapping and variant calling using freebayes-parallel
snakemake-kmerGWAS
A snakemake-automated pipeline that performs k-mer-based GWAS and downstream k-mer/read alignments
snakemake-normalised-transcript-coverage-profile
Pipelines and scripts to generate normalised transcript coverage profile for reference contigs
snakemake-phylogenomics-data-preprocessing
A snakemake-automated pipeline that performs alignment data processing upstream of phylogenomic analysis
snakemake_ont_consensus_build
A mini snakemake pipeline to batch construct consensus sequences from long nanopore amplicons w/ medaka for a set of samples
wheat-protoplast-RNAseq-DESeq2
Rscripts for differential expression analysis of Triticum aestivum RNAseq using DESeq2 package
ritatam's Repositories
ritatam/nanopore-biosecurity-workshop-2022
long-read amplicon consensus reconstruction tutorial in nanopore biosecurity workshop ANU 2022
ritatam/snakemake-freebayes-variant-calling
A snakemake-automated pipeline that performs short-read mapping and variant calling using freebayes-parallel
ritatam/bioinfo-scripts
Collection of small scripts for bioinformatics tasks
ritatam/dorado-snake-nci
snakemake pipeline for duplex basecalling with dorado on NCI
ritatam/Pst104EGenomeBiology
ritatam/snakemake-kmerGWAS
A snakemake-automated pipeline that performs k-mer-based GWAS and downstream k-mer/read alignments
ritatam/snakemake-normalised-transcript-coverage-profile
Pipelines and scripts to generate normalised transcript coverage profile for reference contigs
ritatam/snakemake-phylogenomics-data-preprocessing
A snakemake-automated pipeline that performs alignment data processing upstream of phylogenomic analysis
ritatam/snakemake_ont_consensus_build
A mini snakemake pipeline to batch construct consensus sequences from long nanopore amplicons w/ medaka for a set of samples
ritatam/wheat-protoplast-RNAseq-DESeq2
Rscripts for differential expression analysis of Triticum aestivum RNAseq using DESeq2 package