Pinned Repositories
AI2BMD
AI-powered ab initio biomolecular dynamics simulation
alphafold3
AlphaFold 3 inference pipeline.
causality-tutorials
Short tutorials on the use of machine learning methods for causal inference
CHEM101.6
chroma
A generative model for programmable protein design
DCA
molmapnets
Neural nets for MolMap generated features.
riversdark's Repositories
riversdark/molmapnets
Neural nets for MolMap generated features.
riversdark/AI2BMD
AI-powered ab initio biomolecular dynamics simulation
riversdark/alphafold3
AlphaFold 3 inference pipeline.
riversdark/causality-tutorials
Short tutorials on the use of machine learning methods for causal inference
riversdark/CHEM101.6
riversdark/chroma
A generative model for programmable protein design
riversdark/DCA
riversdark/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
riversdark/dlfc_notes
Notes and code for Bishop 2024 book "Deep Learning: Foundation and Concepts".
riversdark/foldingdiff
Diffusion models of protein structure; trigonometry and attention are all you need!
riversdark/genie2
Protein structure diffusion model for unconditional protein generation and motif scaffolding
riversdark/nanoGPT
The simplest, fastest repository for training/finetuning medium-sized GPTs.
riversdark/numpyro
Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
riversdark/riversdark.github.io
riversdark/md-agent
Molecular dynamics simulations with an LLM agent
riversdark/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
riversdark/PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
riversdark/PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
riversdark/pytorch-ddpm
Implementation of the paper "Denoising Diffusion Probabilistic Models" in PyTorch
riversdark/pytorch-transformer
Attention is all you need implementation
riversdark/quantum-computing-exploration-for-drug-discovery-on-aws
Deploy a solution to research on drug discovery problems using quantum computing and classical computing resources.
riversdark/quantum-protein-folding
Code for the paper "Resource-efficient quantum algorithm for protein folding"