riyuebao
Co-Director of Cancer Bioinformatics @ UPMC Hillman Cancer Center; Faculty @ University of Pittsburgh Medicine. Data diver. Wannabe chef. Slow hiker.
Pittsburgh
Pinned Repositories
ACE2_TMPRSS2_multicorrelates
awesome_spatial_omics
tools and notes for spatial omics
bioinfo-snippets
Repo to host useful codes, texts, and other stuff.
Cancer-omics-data-curated
Curated public cancer omics datasets
CRI-Workshop-Nov2016-RNAseq
RNAseq pipelines for AMIA2016 workshop
nDSPA
An R package for quality metrics, preprocessing, visualization, and differential testing analysis of spatial omics data. Online link: https://riyuebao.shinyapps.io/ndspa/
T-cell-inflamed-multicorrelates
This repo hosts the data tables and figures for Bao et al manuscript entitled "Molecular correlates and therapeutic targets in T cell-inflamed versus non-T cell-inflamed tumors across cancer types" Under Review.
virtual-conferences-workshops
This repo collects the list of conferences/meetings/workshops that have gone virtual in 2020.
riyuebao's Repositories
riyuebao/virtual-conferences-workshops
This repo collects the list of conferences/meetings/workshops that have gone virtual in 2020.
riyuebao/nDSPA
An R package for quality metrics, preprocessing, visualization, and differential testing analysis of spatial omics data. Online link: https://riyuebao.shinyapps.io/ndspa/
riyuebao/awesome_spatial_omics
tools and notes for spatial omics
riyuebao/CRI-Workshop-Nov2016-RNAseq
RNAseq pipelines for AMIA2016 workshop
riyuebao/T-cell-inflamed-multicorrelates
This repo hosts the data tables and figures for Bao et al manuscript entitled "Molecular correlates and therapeutic targets in T cell-inflamed versus non-T cell-inflamed tumors across cancer types" Under Review.
riyuebao/ACE2_TMPRSS2_multicorrelates
riyuebao/bioinfo-snippets
Repo to host useful codes, texts, and other stuff.
riyuebao/Cancer-omics-data-curated
Curated public cancer omics datasets
riyuebao/CellAnnotationTutorial
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
riyuebao/CSI-Microbes-identification
Code for the identification step for CSI-Microbes
riyuebao/docker-bam_readcount_helper-cwl
riyuebao/dsFDR
descrete False Discovery Rate method
riyuebao/ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
riyuebao/facets
Visualizations for machine learning datasets
riyuebao/Hackathon
Multi-omics studies are available here
riyuebao/MSTP_summer2022_class07
riyuebao/NBL-TME-Immunogenomics
riyuebao/q2_dsfdr
riyuebao/SpliceS
riyuebao/STAR-SEQR
RNA Fusion Detection and Quantification