rknx
A little bit of Javascript, little bit of android and a lot of Photoshop. Plant pathologist by training.
University of FloridaGainesville, FL
Pinned Repositories
AvrBsT
Statistical analysis of bacterial dispersal in R
BactDating
Bayesian inference of ancestral dates on bacterial phylogenetic trees
prok-snptree
rknx.github.io
RNAseq
Pipeline for parallelized RNA-seq analysis
rknx's Repositories
rknx/prok-snptree
rknx/AvrBsT
Statistical analysis of bacterial dispersal in R
rknx/rknx.github.io
rknx/RNAseq
Pipeline for parallelized RNA-seq analysis
rknx/BactDating
Bayesian inference of ancestral dates on bacterial phylogenetic trees
rknx/BasicBioinformatics
This repo has files and instructions used for the "Basic Bioinformatics and command-line tools for phytopathologists" organized during Plant Health 2020. Unlike the official repo, this repo is constantly being updated.
rknx/blast2fasta.sh
Shell script to convert blast XML output (`-outfmt 5`) into FASTA or multiFASTA format.
rknx/Custom-themes
Custom themes for Files
rknx/CustomPrompts
Custom prompts in multiple console environments
rknx/deep_learning
rknx/ecology-workshop
Ecology Workshop Overview
rknx/eff-search
rknx/Geranium_Project_2022
rknx/ios-akarsh-seggemu-resume
iOS resume application that follows schema of https://jsonresume.org/ to parse the JSON resume file and shows the resume in an iOS application
rknx/lesson-example
Example lesson using The Carpentries lesson template.
rknx/ngs-bsa
Pipeline for the Next Gen Sequencing Bulked Sequence Analysis pipeline
rknx/nursery-dispersal
Code for https://doi.org/10.1094/pdis-05-20-0945-re
rknx/oh-my-posh
A prompt theming engine for Powershell
rknx/organization-genomics
Project Organization and Management for Genomics
rknx/Pseudomonas-16s
rknx/pyani
Application and Python module for average nucleotide identity analyses of microbes.
rknx/python-ecology-lesson
Data Analysis and Visualization in Python for Ecologists
rknx/QTLseqr
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
rknx/slurm
Slurm: A Highly Scalable Workload Manager
rknx/socialsci-workshop
Social Science Workshop Overview
rknx/styles
Official repository for Citation Style Language (CSL) citation styles.
rknx/vscode-R-syntax
r.json syntax for vscode-R for my custom pipes
rknx/WindowsTerminalProfile
My profile for windows terminal
rknx/workshop-template
The Carpentries Workshop Template
rknx/Zotero-Dark-Theme
userChrome.css file for a Zotero dark theme. Suggestions for improvements are welcome.