rlebron-bioinfo

rlebron-bioinfo's Stars

• bowang-lab/scGPT

  Language:Jupyter Notebook1.1k222

• conda-incubator/condacolab

  Install Conda and friends on Google Colab, easily

  Language:Jupyter Notebook34448

• mkery/Verdant

  An experimental tool that stores and visualizes local versioning in JupyterLab

  Language:TypeScript14821

• mevers/build_custom_BSgenome_TxDb

  Build a custom BSgenome/TxDb R package

  Language:HTML87

• pyscript/pyscript

  PyScript is an open source platform for Python in the browser. Try PyScript: https://pyscript.com Examples: https://tinyurl.com/pyscript-examples Community: https://discord.gg/HxvBtukrg2

  Language:Python18.1k1.4k

• freebayes/freebayes

  Bayesian haplotype-based genetic polymorphism discovery and genotyping.

  Language:C++796264

• sib-swiss/training-collection

  Collection of bioinformatics training materials

  Language:Python989183

• 1edv/evolution

  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'

  Language:Jupyter Notebook9427

• AstraZeneca/rexmex

  A general purpose recommender metrics library for fair evaluation.

  Language:Python27825

• GoekeLab/awesome-nanopore

  A curated list of awesome nanopore analysis tools.

  24446

• vragh/seqvisr

  Biological sequence visualization functions in R

  Language:R111

• seq-lang/seq

  A high-performance, Pythonic language for bioinformatics

  Language:C++70050

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2k507

• diego-vicente/som-tsp

  Solving the Traveling Salesman Problem using Self-Organizing Maps

  Language:Python3.9k606

• life4/textdistance

  📐 Compute distance between sequences. 30+ algorithms, pure python implementation, common interface, optional external libs usage.

  Language:Python3.4k251

• biocorecrg/ExOrthist

  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.

  Language:Nextflow214

• svalvaro/drawCell

  R package to create cell pictures.

  Language:R13317

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python13k2.3k

• wurmlab/flo

  Same species annotation lift over pipeline.

  Language:Ruby9628

• wurmlab/genevalidator

  GeneValidator: Identify problems with predicted genes

  Language:Ruby4518

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++7k369

• BIMSBbioinfo/janggu

  Deep learning infrastructure for genomics

  Language:Jupyter Notebook25634

• kipoi/kipoi

  Kipoi's model zoo API

  Language:Jupyter Notebook23641

• budach/pysster

  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks

  Language:Python8722

• FunctionLab/selene

  a framework for training sequence-level deep learning networks

  Language:Jupyter Notebook37591

• etirouthier/keras_dna

  Language:Python237

• mlflow/mlflow

  Open source platform for the machine learning lifecycle

  Language:Python19.1k4.3k

• ashiqks/Flask-Python

  Flask rest-api with database deployed on heroku cloud

  Language:Python616

• theislab/dca

  Deep count autoencoder for denoising scRNA-seq data

  Language:Python25171

• oscar-franzen/PanglaoDB

  metadata and data from the database

  389