Pinned Repositories
hgv_modules
Teaching modules for Human Genome Variation Lab.
aneuploidy-gwas
Analysis code accompanying the paper "Common variants spanning PLK4 are associated with mitotic-origin aneuploidy in human embryos." Science. (2015).
aneuploidy_analysis
Analysis code accompanying the paper "Evidence of selection against complex mitotic-origin aneuploidy during preimplantation development." PLoS Genetics.
dmel-longread-assembly
Analysis code accompanying the paper "Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements." PLoS One. (2014).
egillettii-rnaseq
Data and scripts accompanying 2014 Molecular Ecology paper: http://www.ncbi.nlm.nih.gov/pubmed/24237665
neanderthal_ase
Analysis code accompanying the manuscript "Impacts of Neandertal-introgressed sequences on the landscape of human gene expression".
tripolar_mitosis
Data and code accompanying paper "Tripolar mitosis drives the association between maternal genotypes of PLK4 and aneuploidy in human preimplantation embryos"
rmccoy7541's Repositories
rmccoy7541/dmel-longread-assembly
Analysis code accompanying the paper "Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements." PLoS One. (2014).
rmccoy7541/egillettii-rnaseq
Data and scripts accompanying 2014 Molecular Ecology paper: http://www.ncbi.nlm.nih.gov/pubmed/24237665
rmccoy7541/aneuploidy_analysis
Analysis code accompanying the paper "Evidence of selection against complex mitotic-origin aneuploidy during preimplantation development." PLoS Genetics.
rmccoy7541/neanderthal_ase
Analysis code accompanying the manuscript "Impacts of Neandertal-introgressed sequences on the landscape of human gene expression".
rmccoy7541/aneuploidy-gwas
Analysis code accompanying the paper "Common variants spanning PLK4 are associated with mitotic-origin aneuploidy in human embryos." Science. (2015).
rmccoy7541/tripolar_mitosis
Data and code accompanying paper "Tripolar mitosis drives the association between maternal genotypes of PLK4 and aneuploidy in human preimplantation embryos"
rmccoy7541/aneuploidy_scrnaseq
Detection of aneuploidy using scRNA-seq data from human embryos.
rmccoy7541/assess-assembly
Scripts to analyze the presence or absence of generic genomic features in a de novo assembly.
rmccoy7541/binder
jupyter notebooks for qbb2020
rmccoy7541/compass
Perl / R scripts to COMpare a DNA sequence ASSembly to a trusted reference sequence
rmccoy7541/IBDmix
rmccoy7541/ms-introgression
A short program to find introgressed haplotypes in simulated ms (or macs) data.
rmccoy7541/neand_sQTL
Introgression of splice-altering variation from Neanderthals to modern humans.
rmccoy7541/python-novice-inflammation
Programming with Python
rmccoy7541/qbb2019-answers
rmccoy7541/rmccoy7541.github.io
Origins of Aneuploidy Research Consortium
rmccoy7541/sqtlviztools
functions for sQTL visualisation