Pinned Repositories
analysis_templates
Basic data analysis scripts to be modified for each project
multilingual_journal_club
a community brought together by science and communication
202206_mammallometry
BLCA
cophylogeny_simulations
dekupl-run
Identify differentially expressed k-mers between RNA-Seq datasets
entrez_qiime
A utility to generate input files for taxonomy assignment in QIIME from the NCBI database
GCMP
GCMP data analysis
gcmp_stan_symportal
full workflow for analysis of GCMP Symbiodiniaceae data
stan_models
collection of models written in Stan, with data wrangling code to run the models on real data
rmcminds's Repositories
rmcminds/stan_models
collection of models written in Stan, with data wrangling code to run the models on real data
rmcminds/202206_mammallometry
rmcminds/BLCA
rmcminds/cophylogeny_simulations
rmcminds/dekupl-run
Identify differentially expressed k-mers between RNA-Seq datasets
rmcminds/entrez_qiime
A utility to generate input files for taxonomy assignment in QIIME from the NCBI database
rmcminds/GCMP
GCMP data analysis
rmcminds/gcmp_stan_symportal
full workflow for analysis of GCMP Symbiodiniaceae data
rmcminds/inat_recent_rare
probably Shiny app that retrieves user records or bounding box records and finds recent unusual observations. would like to someday create model based predictions for how unusual something is (training something with cycles and an intercept - maybe leave out linear trend?)
rmcminds/iNatle
iNaturalist guessing game pulling from recent local observations
rmcminds/MARES_database_pipeline
rmcminds/McMinds_et_al_2022
Code used to analyze data and produce figures for McMinds et al 2022
rmcminds/merdemicrobes
Personal webpage merdemicrobes.org source
rmcminds/metagenomics_workshop
for sharing/developing metagenomics workshop code
rmcminds/NewWave
NewWave
rmcminds/rmcminds.github.io
rmcminds/sc_mixology
This contains the dataset for comparing scRNA-seq analysis methods
rmcminds/SymPortal_framework
Welcome to the SymPortal GitHub repository. SymPortal is an analytical tool used to identify Symbiodiniaceae spp. taxa using Illumina rDNA ITS2 amplicon NGS data.
rmcminds/tara_pacific_in_situ_photos
rmcminds/thecnidaegritty
Lab webpage thecnidaegritty.org source
rmcminds/zinbwave_phylo
Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave