This repository contains the Biowdl pipeline usable for processing germline-DNA data. Starting with FASTQ files and resulting in a multisample VCF files.
Documentation for this pipeline can be found here.
This pipeline is part of Biowdl developed by the SASC team at Leiden University Medical Center.
For any question related to germline-DNA, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.