Pinned Repositories
tsne-cuda
GPU Accelerated t-SNE for CUDA with Python bindings
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
cmpbio-final-project
datablocks
Simple, Composable, PyTorch Friendly data types
dev-environment
evo
Mono-repo for protein utilities.
img2stl
Converts images to 3d printable stl files
msa-transformer
MSA Transformer reproduction code
tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
rmrao's Repositories
rmrao/msa-transformer
MSA Transformer reproduction code
rmrao/evo
Mono-repo for protein utilities.
rmrao/dev-environment
rmrao/cmpbio-final-project
rmrao/apex
A PyTorch Extension: Tools for easy mixed precision and distributed training in Pytorch
rmrao/esm-1
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
rmrao/pytorch-lightning
The lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate
rmrao/transformer-pytorch-fast-decode
Implements fast decoding on the transformer
rmrao/datablocks
Simple, Composable, PyTorch Friendly data types
rmrao/backupscript
rmrao/CC-FPSE
Code for NeurIPS 2019 paper "Learning to Predict Layout-to-image Conditional Convolutions for Semantic Image Synthesis"
rmrao/ColabFold
Making Protein folding accessible to all via Google Colab!
rmrao/compbio-resources
Resources for Computational Biology for people w/ ML Background
rmrao/DeepSequence
A generative latent variable model for biological sequence families.
rmrao/fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
rmrao/GREMLIN_CPP
GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
rmrao/gym-gridworld
Simple grid-world environment compatible with OpenAI-gym
rmrao/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
rmrao/ipython-utils
rmrao/make-hw-script
Script for creating a hw folder, copying a template.tex file, and changing hw number
rmrao/Master-Template
Template and style files for ICLR
rmrao/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
rmrao/probability
Probabilistic reasoning and statistical analysis in TensorFlow
rmrao/pyforest
pyforest - feel the bliss of automated imports
rmrao/pythia
A modular framework for vision & language multimodal research from Facebook AI Research (FAIR)
rmrao/python-syntax
Python syntax highlighting for Vim
rmrao/rmrao.github.io
rmrao/tape-leaderboard
leaderboard for TAPE
rmrao/text-to-text-transfer-transformer
Code for the paper "Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer"
rmrao/vim-snippets
vim-snipmate default snippets (Previously snipmate-snippets)