Automatically create an HTML web site from fastqc output that the user can easily navigate and use to visualize their Illumina sequencing QC results.
./create_fastqc_HTML.py -i fastqc_example/ -c 2 -w 400
Usage: create_fastqc_HTML.py [options]
Options:
-h, --help show this help message and exit
-i INPUT_DIR, --input-dir=INPUT_DIR
path to directory containing the unzipped fastqc
output directories. DEFAULT is current working directory
-c NCOLS, --cols=NCOLS
# of thumbnail images to display horizontally in each
comparison grid. Must be 1 to 10. DEFAULT is 4
-w IMG_WIDTH, --img-width=IMG_WIDTH
width (in pixels) of each thumbnail image. Must be >=
50. DEFAULT is 350 px