robbert-harms/MDT

Value Error cannot find model 'NODDI'

ucigrangers opened this issue · 3 comments

ucigrangers commented

Hi. I'm hoping someone could help point me in the right direction. I am new to mdt and using the sample data from mdt.get_example_data.

I am using a really simple call but consistently receive the error: ValueError: The model with the name "NODDI" could not be found.

Is this a problem with the installation-can't find NODDI? I used pip install mdt and can source other functions (can mdt.load.input_data & mdt._create_protocol) but not sure how to proceed using the toolbox with this error.

input_data = mdt.load_input_data(
path+'b1k_b2k_example_slices_24_38',
path+'b1k_b2k.prtcl',
path+'b1k_b2k_example_slices_24_38_mask')
mdt.fit_model('NODDI', input_data, 'C:\Users\sgranger\OneDrive - Mass General Brigham\Desktop\mdt_example_data\b1k_b2k')

robbert-harms commented

Hi ucigrangers,

Have you run the command line function "mdt-init-user-settings" after installing MDT (https://mdt-toolbox.readthedocs.io/en/latest_release/install.html#initialization)?

Best,

Robbert

robbert-harms commented

Hi ucigrangers,

Can you try again with the latest MDT?

Best,

Robbert

ucigrangers commented