methods2models
What does this software do?
This software gives you the (best) protein combination that allows you to analyze cell processes in different phases of the cell cycle.
Required dependencies
- http://www.intiquan.com/iqm-tools/
- https://www.c2b2.columbia.edu/danapeerlab/html/wanderlust.html
- http://sbml.org/Software/libSBML
Installation
- Did you read the README?
- Save this directory in your MATLAB path
- $run M2M_check
- $run m2m
Files
Input files
- cellcyclemodel.txt (For more help vist: http://www.intiquan.com)
Output files
- pyyyymmddThhmmss.txt (Your parameters which were used for this simulation)
- ryyyymmddThhmmss.txt (Your results)
- wyyyymmddThhmmss.mat (Your workspace)
Example
$ m2m(0:1000,1000,2,0.01,'model_toettcher2008MEX',0);
License
Note: You can run this script in headless mode.