Pinned Repositories
biodata
Collection of biodata objects
decks
Public RevealJS decks
DNAPrinter
Develop code to parse DNA sequences for automated synthesis and assembly
dotfiles
Dotfiles for Linux and OS X
genome_ml
Genome Editing Machine Learning Repo
GitPlasmidSCM
Experiment Using Git(Hub) to manage biologic sequence information and data
wrapup
Skeleton for wrapping a C/C++ Library in Python
rodoyle's Repositories
rodoyle/decks
Public RevealJS decks
rodoyle/dotfiles
Dotfiles for Linux and OS X
rodoyle/Azimuth
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
rodoyle/big-search
Case Study in Python searching datasets larger than RAM.
rodoyle/bowtie
An ultrafast memory-efficient short read aligner
rodoyle/cas-offinder
An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
rodoyle/consul-rust
Rust client libray for Consul HTTP API
rodoyle/dgcli
Command Line Client for DeskGen Platform
rodoyle/dgparse
Desktop Genetics Public Parser Library
rodoyle/dgvue
Desktop Genetics Vue.js Template Application
rodoyle/ethflow
Smart Contract "tollbooth" with an "expensive" Airflow/TensorFlow Oracle
rodoyle/git-tags-py
CLI for managing release tags in a Git repository
rodoyle/github-rust
A Rust GitHub v3 API client.
rodoyle/guide-cluster
Guide RNA Clustering Example
rodoyle/GUIDES
A new workflow for the custom design of CRISPR libraries.
rodoyle/haystack
Searchable collections of items (haystacks) with a common interface
rodoyle/mal
rodoyle/mongo-rust-driver
Mongo Rust driver built on top of the Mongo C driver
rodoyle/open-guide-picker
Source Code for Guide Picker, In Press
rodoyle/prezto
Fork of prezto with local conf changes
rodoyle/py-evm
A Python implementation of the Ethereum Virtual Machine
rodoyle/pyethapp
rodoyle/PyVCF
A Variant Call Format reader for Python.
rodoyle/reveal-boilerplate
Boilerplate for slides with reveal.js
rodoyle/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
rodoyle/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
rodoyle/rust-openssl
OpenSSL bindings for Rust
rodoyle/salt
Software to automate the management and configuration of any infrastructure or application at scale. Get access to the Salt Open software package repository here:
rodoyle/suffix
Fast suffix arrays for Rust (with Unicode support).
rodoyle/swipe
Smith-Waterman database searches with inter-sequence SIMD parallelisation