Pinned Repositories
AmazonDeforestation
Data and R scripts accompanying the paper "Forecasting deforestation in the Brazilian Amazon to prioritize conservation efforts"
cave_monitoring
Data and R scripts accompanying the paper "Optimizing cave monitoring efforts: Insights from long-term data for tropical iron caves" by Leonardo Trevelin, Matheus Simoes, Xavier Prous, Thadeu Pietrobon, Iuri Viana Brandi & Rodolfo Jaffé.
dredge_mc
Assess multicollinearity between predictors when running the dredge function (MuMIn - R)
LanGen_pipeline
Suit of R-scripts to perform landscape genomic analyses
LanGen_pipeline_version2
Suit of R-scripts to perform landscape genomic analyses version 2
Lplot
Local polynomial fitting (LOESS) of pairwise relatedness to pairwise geographic distance
Ne_StrataG.R
Script for estimating Effective Population Size (Ne) using Linkage Desequilibrium in StrataG package
qualis
R scripts for analyses and plots presented in the preprint "QUALIS: The journal ranking system undermining the impact of Brazilian science"
runCS
Function to run Circuitscape from R (Linux only)
TajimaD
rojaff's Repositories
rojaff/LanGen_pipeline
Suit of R-scripts to perform landscape genomic analyses
rojaff/AmazonDeforestation
Data and R scripts accompanying the paper "Forecasting deforestation in the Brazilian Amazon to prioritize conservation efforts"
rojaff/dredge_mc
Assess multicollinearity between predictors when running the dredge function (MuMIn - R)
rojaff/qualis
R scripts for analyses and plots presented in the preprint "QUALIS: The journal ranking system undermining the impact of Brazilian science"
rojaff/runCS
Function to run Circuitscape from R (Linux only)
rojaff/TajimaD
rojaff/cave_monitoring
Data and R scripts accompanying the paper "Optimizing cave monitoring efforts: Insights from long-term data for tropical iron caves" by Leonardo Trevelin, Matheus Simoes, Xavier Prous, Thadeu Pietrobon, Iuri Viana Brandi & Rodolfo Jaffé.
rojaff/LanGen_pipeline_version2
Suit of R-scripts to perform landscape genomic analyses version 2
rojaff/Lplot
Local polynomial fitting (LOESS) of pairwise relatedness to pairwise geographic distance
rojaff/Ne_StrataG.R
Script for estimating Effective Population Size (Ne) using Linkage Desequilibrium in StrataG package
rojaff/r2vcftools_basics
Example script showing how to check and visualize VCF files, filter sites and individuals, save filtered VCF files, calculate genetic diversity and differentiation metrics and convert to other formats.