Pinned Repositories
alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
mcc-dnabert
Install script to run DNABERT on Mayo Clinic Cloud infrastructure
Microsoft365R
R SDK for interacting with Microsoft 365 APIs
MprcExtractRaw
Extracts information from Thermo's .RAW files and produces multiple reports from it
quarto-cli
Open-source scientific and technical publishing system built on Pandoc.
RUnit
Source code for the RUnit R package
swift-bin
Large binaries associated with Swift. Separated to make development of the source code easier.
romanzenka's Repositories
romanzenka/RUnit
Source code for the RUnit R package
romanzenka/mcc-dnabert
Install script to run DNABERT on Mayo Clinic Cloud infrastructure
romanzenka/Microsoft365R
R SDK for interacting with Microsoft 365 APIs
romanzenka/MprcExtractRaw
Extracts information from Thermo's .RAW files and produces multiple reports from it
romanzenka/quarto-cli
Open-source scientific and technical publishing system built on Pandoc.
romanzenka/alphapept
A modular, python-based framework for mass spectrometry. Powered by nbdev.
romanzenka/casanovo
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
romanzenka/candle_lib
romanzenka/caTools
:exclamation: This is a read-only mirror of the CRAN R package repository. caTools — Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
romanzenka/DGSDRP
The source code of paper "deep graph and sequence representation learning for drug response prediction"
romanzenka/HIPT
Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
romanzenka/homl
Hands-On Machine Learning Presentations
romanzenka/lesSDRF
romanzenka/llm-workshop
romanzenka/mgfRcpp
Simple but fast minimal mgf parser made in Rcpp
romanzenka/msmseval
msmsEval from http://physchem.ox.ac.uk/~jwong/msmseval/
romanzenka/opentims
Open-source C++ and Python module for opening binary timsTOF data files.
romanzenka/plotly.R
An interactive graphing library for R
romanzenka/r-pkgs
Building R packages
romanzenka/RANN2
Fast Nearest Neighbour Search (Rcpp wrapper for libANN)
romanzenka/RawTools
RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
romanzenka/restorepoint
Debugging in R with restore points
romanzenka/Singularity
Singularity definitions that can be extended to support execution of community models.
romanzenka/spring-security-adfs-saml2
Spring Security module to authenticate against ADFS using SAML2 protocol
romanzenka/streamlit
Streamlit — A faster way to build and share data apps.
romanzenka/tfjs-tsne
romanzenka/webgl
WebGL demos for a presentation
romanzenka/WSITools
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
romanzenka/XCaliburMethodReader
A Thermo XCalibur Method (.meth) file reader, extracter, and converter command-line program for mass spectrometry researchers.
romanzenka/xMWAS
Fixes to xMWAS to enable new version of R