roozbehdn
Postdoc developing statistical/ML methods for scRNA-Seq and alternative splicing
Stanford UniversityStanford
Pinned Repositories
SPLASH
Equivalent-Junctions
KNIFE
Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms
SICILIAN
TGS1_SMN
This repository contains the bioinformatics codes used for the RNA-Seq analysis between WT and SMN/TGS1 mutant cell lines
ReadZS
The Read Z-score (ReadZS) is a metric that summarizes the transcriptional state of a gene in a single cell.
SICILIAN
SPLASH
SPLASH-plus
SPLASH_supervised_test
The repository contains the script for performing GLM with lasso-based multinomial regression
roozbehdn's Repositories
roozbehdn/Equivalent-Junctions
roozbehdn/KNIFE
Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms
roozbehdn/SICILIAN
roozbehdn/TGS1_SMN
This repository contains the bioinformatics codes used for the RNA-Seq analysis between WT and SMN/TGS1 mutant cell lines