Scripts to reproduce results from "Spatial cell type mapping of multiple sclerosis lesions".
Inside scripts
there are different subdirectories:
figures/
: Python and R scripts to reproduce the mansucript's figureslaunchers/
: Scripts to send jobs to the cluster using SLURMpipeline/
: Scripts to run processing scripts inprocess
sequentalyplot/
: General plotting scriptsprocess/
: Scripts to process the raw snRNA-seq and Visium datasmFISH/
: Scripts to reproduce the smFISH imaging quantification
Lerma-Martin, C., Badia-i-Mompel, P. et al. Spatial cell type mapping of multiple sclerosis lesions. bioRxiv 2022.11.03.514906 (2022) doi:10.1101/2022.11.03.514906.