Pinned Repositories
amazon-genomics-cli
autothresholdr
An R port of the "Auto Threshold" plugin for ImageJ for thresholding images.
batchmix
Semi-supervised and unsupervised Bayesian mixture models that simultaneously infer the cluster/class structure and a batch correction. Densities available are the multivariate normal and the multivariate t. The model sampler is implemented in C++. This package is aimed at analysis of low-dimensional data generated across several batches. See [Colem
detrendr
An R package for detrending images.
exampletestr
An R package for help with writing unit tests based on examples in documentation. Slightly similar to python's doctests.
filesstrings
A set of operations for manipulating strings in R, built on top of the stringr package and inspired by my struggles in trying to sensibly rename microscopy images.
nandb
An R package for performing number and brightness analysis.
phdthesis
My PhD thesis.
strex
Extra string manipulation functions not contained in stringr or stringi.
sysyndo
rorynolan's Repositories
rorynolan/strex
Extra string manipulation functions not contained in stringr or stringi.
rorynolan/exampletestr
An R package for help with writing unit tests based on examples in documentation. Slightly similar to python's doctests.
rorynolan/filesstrings
A set of operations for manipulating strings in R, built on top of the stringr package and inspired by my struggles in trying to sensibly rename microscopy images.
rorynolan/autothresholdr
An R port of the "Auto Threshold" plugin for ImageJ for thresholding images.
rorynolan/detrendr
An R package for detrending images.
rorynolan/nandb
An R package for performing number and brightness analysis.
rorynolan/sysyndo
rorynolan/amazon-genomics-cli
rorynolan/batchmix
Semi-supervised and unsupervised Bayesian mixture models that simultaneously infer the cluster/class structure and a batch correction. Densities available are the multivariate normal and the multivariate t. The model sampler is implemented in C++. This package is aimed at analysis of low-dimensional data generated across several batches. See [Colem
rorynolan/bernie
rorynolan/blog
Github repo that netlify uses for
rorynolan/checkmate
Fast and versatile argument checks
rorynolan/dplyr
dplyr: A grammar of data manipulation
rorynolan/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
rorynolan/genbioconductor
Materials for Genomics Data Science: Introduction to Bioconductor
rorynolan/interop
C++ Library to parse Illumina InterOp files
rorynolan/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
rorynolan/nextflow
A DSL for data-driven computational pipelines
rorynolan/pak
A fresh approach to package installation
rorynolan/parsnip
A tidy unified interface to models
rorynolan/pkgdepends
R Package Dependency Resolution
rorynolan/purrr
A functional programming toolkit for R
rorynolan/r-internals
Documentation for R's internal C API
rorynolan/RcppThread
R-friendly threading in C++
rorynolan/recipes
A preprocessing engine to generate design matrices
rorynolan/RMariaDB
An R interface to MariaDB
rorynolan/roxygen2
Generate R package documentation from inline R comments
rorynolan/testpkg
Minimal package to display my PROTECTion problem
rorynolan/tidymodels.org
Source of tidymodels.org
rorynolan/tune
Tools for tidy parameter tuning