Pinned Repositories
ai-editor
awesome-llm-json
Resource list for generating JSON using LLMs via function calling, tools, CFG. Libraries, Models, Notebooks, etc.
Awesome-LLM4Graph-Papers
"LLM4Graph: A Survey of Large Language Models for Graphs"
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bioawk
BWK awk modified for biological data
germline_caya_solidtumor_analysis
CAYA Analysis
m3m4_work
magi
a pipeline for whole genome phylogeny
rxpViz
rxpViz provides some easy vizualization functions
rosaak's Repositories
rosaak/ai-editor
rosaak/bioawk
BWK awk modified for biological data
rosaak/biopython
Official git repository for Biopython (converted from CVS)
rosaak/bits_of_R
small bits of code
rosaak/m3m4_work
rosaak/btools
A set of R functions that help faciliate a lot of tedious processing
rosaak/CAYA_Sankey_Daigrams
sankey network analysis for the CAYA paper
rosaak/ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
rosaak/clueless
trying out some genomic compositional analysis
rosaak/Ftransform
numerical transformation of nts
rosaak/genomicPipelines
omic pipelines
rosaak/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
rosaak/metagMisc
Miscellaneous functions for metagenomic analysis.
rosaak/PICRUStNotes
ipython notebooks and notes regarding pirust run and downstream pipelines I made
rosaak/pten_ata_ngs
scripts of pten rna seq and chip seq analysis
rosaak/PythonNGS
mostly all the small scripts i made
rosaak/qiime2R
Import qiime2 artifacts to R
rosaak/RNAseq-workflow
A repository for setting up a RNAseq workflow
rosaak/Shiny_BLAST
rosaak/Visualize_Taxa_Frequency
Visualizing taxa of different amplicon primer sets