Rosalind Franklin Institute
The Rosalind Franklin Institute is dedicated to transforming life science through interdisciplinary research and technology development
UK
Pinned Repositories
cuda-slic
A CUDA implementation of the SLIC Superpixel algorithm
kompressor
A lossless neural compression framework built on top of JAX.
okapi-em
napari plugin to deal with charging artifacts in tomography electron microscopy data
Opt-ID
Code for the Optimisation of ID's using Python and Opt-AI
Ot2Rec
Pipeline to reconstruct cryo-electron tomograms with different software packages
parakeet
Phantom generator
python-multem
Python wrapper for the MULTEM simulation package
RedLionfish
rfi-file-monitor
scivision-parakeet
Parakeet plugin for scivision framework
Rosalind Franklin Institute's Repositories
rosalindfranklininstitute/RedLionfish
rosalindfranklininstitute/parakeet
Phantom generator
rosalindfranklininstitute/python-multem
Python wrapper for the MULTEM simulation package
rosalindfranklininstitute/kompressor
A lossless neural compression framework built on top of JAX.
rosalindfranklininstitute/antigen-app
Web app for managing nanobody data
rosalindfranklininstitute/HDRUK-CoMeTR
Comprehensive Metrics for the quantitative and qualitative evaluation and comparison of Tomography Reconstructions
rosalindfranklininstitute/LeopardGecko
Software to analyse microscopy volumetric data that has been segmented by ML prediction
rosalindfranklininstitute/DisTRaX
A fast and scalable deployment tool to create quick and efficient storage systems onto high-performance computing (HPC) compute nodes utilising the compute nodes system memory/storage.
rosalindfranklininstitute/empiar-spw
rosalindfranklininstitute/guanaco
rosalindfranklininstitute/phd-training-2022
This repo is a selection of worked example used in our PhD training
rosalindfranklininstitute/SuRVoS2
SuRVoS2 - Volumetric Image Segmentation Workbench
rosalindfranklininstitute/volume-segmantics
A toolkit for semantic segmentation of volumetric data using PyTorch deep learning models
rosalindfranklininstitute/DeltaBot
Print and build instructions for the Franklins Delta Robot for sample scanning.
rosalindfranklininstitute/autolamella
autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
rosalindfranklininstitute/check-my-repo
Automatically check repositories health and quality and build reports that help us understand the current state of Sauce Labs repositories
rosalindfranklininstitute/christmastree2022
To collate the work that we have done of the Christmas tree designs 2022's Christmas tree decorating competition
rosalindfranklininstitute/container-jax
rosalindfranklininstitute/CreeperChallenge
rosalindfranklininstitute/documentation
Documentation for SciCat metadata server :page_with_curl:
rosalindfranklininstitute/fibsem
A universal API for FIBSEM control
rosalindfranklininstitute/floret
Flower shaped scans for cryo-ET
rosalindfranklininstitute/GeoLlama
A Python package for estimating sample thickness in cryo electron tomograms
rosalindfranklininstitute/maptools
rosalindfranklininstitute/napari-h5
Napari plugin to help read hdf5 files
rosalindfranklininstitute/python-template
A template repository for python projects
rosalindfranklininstitute/redlionfish-feedstock
A conda-smithy repository for redlionfish.
rosalindfranklininstitute/scicatproject.github.io
SciCat Data Catalogue Documentation Website
rosalindfranklininstitute/VirusFactory
Python notebooks for the paper Segmentation of Volumetric Bio-Imaging Data Using Crowdsourced Object-Based Annotation
rosalindfranklininstitute/whippet