roschwarz

Pinned Repositories

• sus

  Speed Up Sequence downloads - (sus)

  Language:Shell00

• TEdetectionEvaluation

  Tool comparison for detecting differentially expressed individual transposable elements

  Language:R00

• bs_amplicon_methylation

  Language:Python10

• biopython

  Official git repository for Biopython (originally converted from CVS)

  Language:Python00

• ChimeraTE

  A pipeline to detect chimeric transcripts derived from genes and transposable elements.

  Language:Python00

• hydi

  calling differential hydroxymethylation

  Language:C00

• readiator-1

  Tool to simulate RNA-Seq data.

  Language:Python00

• SalmonTE

  SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

  Language:Jupyter Notebook00

• TEanalysis

  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.

  Language:Perl00

• TEffectR

  Language:R00

roschwarz's Repositories