/segment_anything_sandbox

Primary LanguagePython

Trying out segment_anything

To setup:

python -m venv sam-env
source sam-env/bin/activate
pip install -r requirements.txt

Hello world

samlog.py: Example of running model programmatically with a single-cell image (nuclear + membrane channels).

To run interactively:

  1. Run ipython -i samlog.py
  2. There is a breakpoint to allow you to interact with the image. Left-click to add "object" points and right-click to add "not object" points
  3. When you're done adding points, type c + enter to exit the debugger.

You can continue interacting with the image and re-running predictions as well.

Derived from the napari plugin from JoOkuma