roy29fuku/open-japanese-mesh

open-japanese-mesh

objectives

• map Japanese biomedical terms to the IDs of various ontologies
• submit to PubDictionary

setup

prepare Python enviroment

$ pipenv install
$ pipenv shell

write the path of the files

$ cp .env.sample .env
$ vi .env

how to use

$ pipenv run jupyter notebook

see mannual.ipynb

data

• Japanese terminology
  • Kitasato University's English-Japanese
    • 医学用語集（北里大学 医療情報学研究室）
  • TEMU
• ontology
  • MeSH
    • MeSH Descriptor
    • MeSH Supplementary

documents

• BLAH5
• BLAH6