rpianezza

PhD student in bioinformatics at PopGen Vienna. Interested in transposable elements, horizontal transfers and ancient DNA

PopGen ViennaVienna

Pinned Repositories

dmel_TE_invasions
Language:Python3 2 00
GraffiTE
GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
Language:R106 4 344
2040A_P-element
Language:Python00
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Language:Perl225 6 24949
Dmel-200years
11 TE invasions in 200 years in D. melanogaster
Language:Python0 2 00
Dmel-Spoink
Discovering the invasion of the TE Spoink in Drosophila melanogaster
Language:C0 2 01
DoubleTrouble
Investigating TE invasion history in the melanogaster subgroup
Language:HTML0 2 00
GenomeDelta
Library-free horizontal transfer detection, with a focus on transposable element invasions
Language:Shell8 1 00
Human-TE
An approach to establish abundance and diversity of transposable elements (TE) in human populations using a reference library
Language:Python3 1 00
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Language:Python130 5 10019

rpianezza/GenomeDelta
Library-free horizontal transfer detection, with a focus on transposable element invasions
Language:Shell8 1 00
rpianezza/Human-TE
An approach to establish abundance and diversity of transposable elements (TE) in human populations using a reference library
Language:Python3 1 00
rpianezza/Dmel-200years
11 TE invasions in 200 years in D. melanogaster
Language:Python0 2 00
rpianezza/Dmel-Spoink
Discovering the invasion of the TE Spoink in Drosophila melanogaster
Language:C0 2 01
rpianezza/DoubleTrouble
Investigating TE invasion history in the melanogaster subgroup
Language:HTML0 2 00