rpianezza
PhD student in bioinformatics at PopGen Vienna. Interested in transposable elements, horizontal transfers and ancient DNA
PopGen ViennaVienna
Pinned Repositories
dmel_TE_invasions
GraffiTE
GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
2040A_P-element
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Dmel-200years
11 TE invasions in 200 years in D. melanogaster
Dmel-Spoink
Discovering the invasion of the TE Spoink in Drosophila melanogaster
DoubleTrouble
Investigating TE invasion history in the melanogaster subgroup
GenomeDelta
Library-free horizontal transfer detection, with a focus on transposable element invasions
Human-TE
An approach to establish abundance and diversity of transposable elements (TE) in human populations using a reference library
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
rpianezza's Repositories
rpianezza/GenomeDelta
Library-free horizontal transfer detection, with a focus on transposable element invasions
rpianezza/Human-TE
An approach to establish abundance and diversity of transposable elements (TE) in human populations using a reference library
rpianezza/Dmel-200years
11 TE invasions in 200 years in D. melanogaster
rpianezza/Dmel-Spoink
Discovering the invasion of the TE Spoink in Drosophila melanogaster
rpianezza/DoubleTrouble
Investigating TE invasion history in the melanogaster subgroup