Pinned Repositories
ankle_knowledge_space
Article describing the creation of an ankle fracture imaging database followed by knowledge space modeling
basilicata_trial
Educational trial from basilicata group
dynamic_meta_analyses
nof1_arXiv
N-of-1 review for arXiv
semantic_exercises
Toolbox
A toolbox of code snippets that can be used to feed other statistical and data mining analyses, all conducted in a social way within github. Main advantages include: (1) huge repository of previous analyses, with the people who conducted literally one email/g+ post away, (2) clinical researchers do not need to wait for statisticians/analysts to conduct small modifications or test new approaches, although they keep working side by side with clinical researchers for more complex analyses, (3) no need to copy and paste from result logs into a manuscript table -- tables will be generated automatically over time we will automate most of our analyses, (4) all analyses will start with you receiving a script template from a mentor, when clinical researchers can then see one and then do one, (5) all of our analyses are fully reproducible, with scripts being available within manuscripts, something that reviewers will definitely appreciate
rpietro's Repositories
rpietro/Toolbox
A toolbox of code snippets that can be used to feed other statistical and data mining analyses, all conducted in a social way within github. Main advantages include: (1) huge repository of previous analyses, with the people who conducted literally one email/g+ post away, (2) clinical researchers do not need to wait for statisticians/analysts to conduct small modifications or test new approaches, although they keep working side by side with clinical researchers for more complex analyses, (3) no need to copy and paste from result logs into a manuscript table -- tables will be generated automatically over time we will automate most of our analyses, (4) all analyses will start with you receiving a script template from a mentor, when clinical researchers can then see one and then do one, (5) all of our analyses are fully reproducible, with scripts being available within manuscripts, something that reviewers will definitely appreciate
rpietro/agile_toc_management
Use of a combined Agile and Theory of Constraints framework for the management of enrollment and attrition in clinical trials
rpietro/GlocalRegistry
Describes reproducible data quality monitoring for a cardiac registry
rpietro/Infotrial
Analysis for infotrial application
rpietro/alfred_preferences
Alfred preferences
rpietro/Arthroplasty
Analysis for an arthroplasty data set from HC-USP
rpietro/BayesCV
Bayesian models for cardiovascular diseases
rpietro/concerto4concerto
The package created by Przemyslaw Lis and distributed under http://goo.gl/SH5s0 . this repo is just a way to install with Hadley's devtools::install_github
rpietro/configuration_scripts
Scripts for .bash_profile, .vimrc and other useful tools
rpietro/davidlynch.org
My website
rpietro/djeventstream
djeventstream
rpietro/ecd_jama_renewal
rpietro/ggplot2
An implementation of the Grammar of Graphics in R
rpietro/git_workflow
a fake repo to test a few workflows
rpietro/HPVOpenDataCollection
This project describes the data quality control and association report for a cohort study of patients undergoing screening for HPV
rpietro/LDimputation
Data analysis for study validating the process platform for the LD-Imputation methodology and also conducting the first biomedical analysis
rpietro/loghandlersplus
Additional handlers for Python logging (AWS SNS, AWS SQS)
rpietro/lowbackpainAdherence
This study investigate the role of frequent contacts with low back pain patients in relation to treatment and research protocol adherence
rpietro/markdown-css-themes
A collection of css themes for Markdown
rpietro/OpenDesignBCD
Contains a number of open designs for big clinical data projects in research and commercialization.
rpietro/PlotAtlas
exploratory project evaluating whether it would be possible to create a plot ontology, formalizing the relation between different variable classes under R and possible plots resulting from the variable combination
rpietro/portland-census
An experiment in breaking down census data by Portland neighborhoods
rpietro/r-on-github
An exploration of R code and package on github, using the github search and repo apis
rpietro/reproducible_research_protocol
A protocol for reproducible research using Big Clinical Data
rpietro/slidify
Generate reproducible html5 slides from R markdown
rpietro/slidifyExamples
Sample Presentations
rpietro/slidifyLibraries
This R package contains all external libraries required by slidify
rpietro/spine_cost
Cost analysis of spine procedures using a data-driven approach
rpietro/usgsd
Analyze US Government Survey Data with the R Language
rpietro/WorkflowAutism
Workflow classification for a clinical and research autism clinic