rpique
I develop computational and statistical methods in genomics and genetics at Wayne State University. Check also my github group @piquelab
Wayne State UniversityDetroit
Pinned Repositories
bedtools2
A powerful toolset for genome arithmetic.
bwa
Burrow-Wheeler Aligner
cutadapt
cutadapt removes adapter sequences from DNA sequencing reads
dap
demux_cellranger_preeclampsia
Demultiplexing pipeline with demuxlet for the preeclampsia project (hg38)
ds18b20-photon
Dallas One-Wire temp sensor DS18XXX Particle Photon
dx-toolkit
DNAnexus platform client libraries.
etherpad-lite
Really real-time collaborative document editing for the rest of us
GADA
Fast segmentation tool for copy number detection analysis in C
UCSC-Browser-code-add-ons
My small additions to the UCSC code
rpique's Repositories
rpique/GADA
Fast segmentation tool for copy number detection analysis in C
rpique/UCSC-Browser-code-add-ons
My small additions to the UCSC code
rpique/bedtools2
A powerful toolset for genome arithmetic.
rpique/bwa
Burrow-Wheeler Aligner
rpique/cutadapt
cutadapt removes adapter sequences from DNA sequencing reads
rpique/dap
rpique/demux_cellranger_preeclampsia
Demultiplexing pipeline with demuxlet for the preeclampsia project (hg38)
rpique/ds18b20-photon
Dallas One-Wire temp sensor DS18XXX Particle Photon
rpique/dx-toolkit
DNAnexus platform client libraries.
rpique/etherpad-lite
Really real-time collaborative document editing for the rest of us
rpique/fastq-tools
Small utilities for working with fastq sequence files.
rpique/fgwas
Functional genomics and genome-wide association studies
rpique/fig1
rpique/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
rpique/kallistobustools
kallisto|bustools workflow for pre-processing single-cell RNA-seq data
rpique/klib
A standalone and lightweight C library
rpique/MACS
MACS -- Model-based Analysis of ChIP-Seq
rpique/MAX6675-library
Arduino library for interfacing with MAX6675 thermocouple amplifier
rpique/node
evented I/O for v8 javascript
rpique/particle-ds18x20
DS18B20/DS18S20 library with support for multiple sensors
rpique/pbsmake
Make-like wrapper for job scheduling on PBS systems.
rpique/PietteTech_DHT
DHT Sensor Library for Spark Core
rpique/probability_cheatsheet
A comprehensive 10-page probability cheatsheet that covers a semester's worth of introduction to probability.
rpique/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
rpique/QuASAR
Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data
rpique/rpique.github.io
rpique website
rpique/samtools
rpique/shiny_popgen
Shiny apps for teaching Population Genetics
rpique/SparkMAX31855
Adafruit MAX31885 Library ported to Spark Core
rpique/SparkMAX6675
Adapting Adafruit Arduino MAX6675 for Spark, following SparkMAX31855 as example