rpolicastro

Senior Scientist, Computational Biology for Ensoma. Supporting efforts to improve in vivo gene editing.

eGenesisCambridge, MA

Pinned Repositories

barcode-generator
Language:R1 1 00
bioconductor-container
Singularity container with some useful bioconductor software
10
cerebroPrepare
R package containing functions to prepare single-cell transcriptomics data saved in a Seurat object for visualization in Cerebro, as well as perform few analytical procedures.
Language:R10
chip_downsampling
Language:R11
CoffeeAndCodingIUB
Language:HTML7 3 02
gostripes
Processing of STRIPE-seq Data
Language:R3 2 21
RNAseq
Standard RNA-seq Workflow
Language:Python33
scProportionTest
Language:R59 3 117
stripeseq_paper
Language:R2 4 01
TSRexploreR
Language:R2 1 00

rpolicastro's Repositories

rpolicastro/scProportionTest
Language:R59 3 117
rpolicastro/CoffeeAndCodingIUB
Language:HTML7 3 02
rpolicastro/gostripes
Processing of STRIPE-seq Data
Language:R3 2 21
rpolicastro/RNAseq
Standard RNA-seq Workflow
Language:Python33
rpolicastro/TSRexploreR
Language:R2 1 00
rpolicastro/ChIPseq
Automation of ChIP-seq Workflow (v0.1.0)
Language:R1 1 02
rpolicastro/PCAtools
PCAtools: everything Principal Components Analysis
Language:R11
rpolicastro/tsrexplorer_old
Language:R1 5 481
rpolicastro/deepTSSscrubbeR
Language:R0 2 11
rpolicastro/gostripes_parallel
Language:Shell02
rpolicastro/Miller_Policastro_2020_scRNAseq
Language:Jupyter Notebook0 3 11
rpolicastro/ZentTools
Language:R0 2 114
rpolicastro/biostar_bot
Language:Python2 0
rpolicastro/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Language:R1 0
rpolicastro/dll1_corin_ht29_rnaseq
Language:Shell1 0
rpolicastro/enaBrowserTools
A collection of scripts to assist in the retrieval of data from the ENA Browser
Language:Python1 0
rpolicastro/EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
rpolicastro/kevin_scRNAseq_shiny
Language:R2 0
rpolicastro/med_abundance
Language:R
rpolicastro/mgatk
mgatk: mitochondrial genome analysis toolkit
Language:Python1 0
rpolicastro/Miller_Policastro_2020_TCGA
Language:R2 01
rpolicastro/Murach_2021_scRNAseq
Language:R2 0
rpolicastro/RcppGSVA
Gene set variation analysis
Language:R
rpolicastro/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
Language:Nextflow1 0
rpolicastro/seurat
R toolkit for single cell genomics
Language:R1 0
rpolicastro/shinyTest
Language:R
rpolicastro/STAR
RNA-seq aligner
rpolicastro/TSRexplore
Scripts and workflows for transcription start region (TSR) exploration
Language:Shell1 0
rpolicastro/velocyto.R
RNA velocity estimation in R
Language:R1 0
rpolicastro/ZentUtils
Language:R1 0