Pinned Repositories
advent-of-code
Solutions for annual Advent of Code challenge hosted at http://www.adventofcode.com/.
healthfinance
R package (on CRAN) that provides a financial model (shiny UI) to project revenue for healthcare practices based on unexpected events.
helixvis
Visualize alpha-helical peptide sequences in R using helical wheels and wenxiang diagrams. See https://doi.org/10.21105/joss.01008 for more details.
ICON
R package that provides complex systems datasets from the Colorado Index of Complex Networks (ICON) at https://icon.colorado.edu/.
ripserr
R package porting Ripser-based persistent homology calculation engines from C++ via Rcpp. Currently ports Ripser (Vietoris-Rips complex) and Cubical Ripser (cubical complex).
TDAstats
R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.
visual-tda
R code associated with preprint proposing flat persistence diagram for better visualization of persistent homology.
webddx
Interact with freely available web differential diagnosis-generating tools.
ggtda
ggplot2 extension to visualize persistent homology
rrrlw's Repositories
rrrlw/TDAstats
R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.
rrrlw/ripserr
R package porting Ripser-based persistent homology calculation engines from C++ via Rcpp. Currently ports Ripser (Vietoris-Rips complex) and Cubical Ripser (cubical complex).
rrrlw/ICON
R package that provides complex systems datasets from the Colorado Index of Complex Networks (ICON) at https://icon.colorado.edu/.
rrrlw/visual-tda
R code associated with preprint proposing flat persistence diagram for better visualization of persistent homology.
rrrlw/advent-of-code
Solutions for annual Advent of Code challenge hosted at http://www.adventofcode.com/.
rrrlw/healthfinance
R package (on CRAN) that provides a financial model (shiny UI) to project revenue for healthcare practices based on unexpected events.
rrrlw/academia
R package to keep track of publication metrics for members of academia.
rrrlw/fitness
Software library providing fitness landscape functionality in R.
rrrlw/r-elective
Elective teaching basic data analysis with R to medical students.
rrrlw/advent-of-code-2019
Solutions for 2019's Advent of Code challenge at http://www.adventofcode.com.
rrrlw/awesome-advent-of-code
A collection of awesome resources related to the yearly Advent of Code challenge.
rrrlw/awesome-for-beginners
A list of awesome beginners-friendly projects.
rrrlw/awesome-R
A curated list of awesome R packages, frameworks and software.
rrrlw/c212
Methods for detecting safety signals in clinical trials using groupings of adverse events by body-system or system organ class.
rrrlw/contributR
R package to generate simple tables to document author contributions to research papers/projects.
rrrlw/covid-primary-care
Data and code supporting research project into potential primary care shortages as a result of the COVID-19 pandemic.
rrrlw/covid-sir
rrrlw/crosstalkr
R package for the identification of functionally important subnetworks
rrrlw/disruptr
Framework to facilitate in-silico repression or network disruption experiments
rrrlw/fitscape
R package to model fitness landscapes and seascapes.
rrrlw/MiR_Combo_Targeting
Companion code for the paper: "Network potential identifies therapeutic miRNA cocktails in Ewing sarcoma"
rrrlw/read-pdf
Convert PDFs of scanned images of text into TXT format so that text functions (e.g. search) can be used.
rrrlw/retract-cardiac
Code to generate figure from https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2782170.
rrrlw/rweekly.org
R Weekly
rrrlw/shinytda
R package containing shiny modules to help visualize and teach concepts in topological data analysis (TDA).
rrrlw/sigQC
R package for gene signature quality control, available from CRAN
rrrlw/tda-book
A Gentle Introduction to Topological Data Analysis in R
rrrlw/tdaunif
uniform manifold samplers for topological data analysis
rrrlw/usethis
Set up commonly used 📦 components
rrrlw/website-copy
A repository for exercism's website's copy