IMGINFO is a C/C++ program to extract selected items from meta-data stored in HDF5 (so-called "master") files that are necessary for processing rotational MX data - e.g. with autoPROC (which comes with it's own version of this program).
You will need
- a C/C++ compiler
- the HDF5 tools "h5cc" and "h5c++"
- several external libraries and plugins
This should be achievable e.g. on Ubuntu 22.04 using the following commands (in the same directory with this source code):
sudo apt-get install hdf5-helpers
wget -O bitshuffle-master.zip \
https://github.com/kiyo-masui/bitshuffle/archive/refs/heads/master.zip
unzip bitshuffle-master.zip
wget -O HDF5Plugin-master.zip \
https://github.com/dectris/HDF5Plugin/archive/refs/heads/master.zip
unzip HDF5Plugin-master.zip
wget -O HDF5-External-Filter-Plugins-master.zip \
https://github.com/nexusformat/HDF5-External-Filter-Plugins/archive/refs/heads/master.zip
unzip HDF5-External-Filter-Plugins-master.zip
Compilation should then just work with
make
For help see
./imginfo -h
- Clemens Vonrhein
- Claus Flensburg
- Thomas Womack
- Gerard Bricogne
See also
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autoPROC: Vonrhein, C., Flensburg, C., Keller, P., Sharff, A., Smart, O., Paciorek, W., Womack, T. & Bricogne, G. (2011). Data processing and analysis with the autoPROC toolbox. Acta Cryst. D67, 293-302.
This project is licensed under the Mozilla Public License, v. 2.0 - see the LICENSE.md file for details. © 2007-2019 Global Phasing Ltd.
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All users provides us with examples of HDF5 datasets - especially our colleagues and collaborators at various synchrotrons and beamlines.
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Our colleagues of the HDRMX group.
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All members of the Global Phasing Consortium