rubenchazarra
PhD Student at the Transcriptomics and Functional Genomics Lab at Barcelona Supercomputing Centre (BSC-CNS)
Barcelons Supercomputing CentreBarcelona,Spain
Pinned Repositories
batchbench
2022-Retreat-Hackathon
This is the repo for the Mele Lab 2022 Retreat Mini Hackathon
2023-04-ScidH-Dimensionality-Reduction
Repo on the 2023-04 Single-cell in da House Session on Dimensionality Reduction
cell-types-eval-control-workflow
Including dataset cross validation step in workflow
cellphonedb
cellxgenecsci
Deploy CellxGene app in Heroku
notebooks
A Docker image for Cellgeni JupyterHub installation
rubenchazarra
My personal repo
sarek-nf-core
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Transcript-Protein-Domain-Mapper
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
rubenchazarra's Repositories
rubenchazarra/Transcript-Protein-Domain-Mapper
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
rubenchazarra/2022-Retreat-Hackathon
This is the repo for the Mele Lab 2022 Retreat Mini Hackathon
rubenchazarra/2023-04-ScidH-Dimensionality-Reduction
Repo on the 2023-04 Single-cell in da House Session on Dimensionality Reduction
rubenchazarra/cell-types-eval-control-workflow
Including dataset cross validation step in workflow
rubenchazarra/cellphonedb
rubenchazarra/cellxgenecsci
Deploy CellxGene app in Heroku
rubenchazarra/notebooks
A Docker image for Cellgeni JupyterHub installation
rubenchazarra/rubenchazarra
My personal repo
rubenchazarra/sarek-nf-core
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
rubenchazarra/ScidH-2023-05-Quest-for-Normalization
Single-cell in da House Session 2. Xavier Soler presenting on Single-cell CUT&TagPRO data normalization strategies
rubenchazarra/SpliZ-nf
Nextflow implementation of SpliZ
rubenchazarra/SpliZ_pipeline
Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
rubenchazarra/sqtlseeker2-nf
An automated sQTL mapping pipeline using Nextflow
rubenchazarra/utils
This is a collection of useful pieces of code I am generating during my PhD at BSC
rubenchazarra/WG1-pipeline-QC-ruben
Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done.