/Widespread-natural-variation-of-DNA-methylation-within-angiosperms

Data and scripts for Widespread natural variation of DNA methylation within angiosperms

Primary LanguagePython

Widespread-natural-variation-of-DNA-methylation-within-angiosperms

Code and data used in the paper "Widespread natural variation of DNA methylation within angiosperms" (Niederhuth et al. 2016, Genome Biology) https://github.com/niederhuth/Widespread-natural-variation-of-DNA-methylation-within-angiosperms

Description of folders and files

  • Final_draft.pdf: The final draft of the manuscript.

  • Figures-and-tables: Final figures and tables.

  • conserved-non-coding-sequences: Contains conserved non-coding sequences used in paper. These were determined in pair-wise comparison using findCNS (Turco et al. 2013 Front. Plant Sci.).

  • species_tree_50_seq.tre: Species tree used for phylogenetic least squares.

  • mC_pyTools.py: python functions used for analyses.