russHyde/coxpresdbr

Issues

• Write function to read a coxpresdb data-frame based file

  #30 opened 5 years ago by russHyde
  0

• Write function to print a data-frame based copy of the CoxpresDB dataset to a file

  #29 opened 5 years ago by russHyde
  0

• `get_coex_partners` is really slow for 20k genes from a CoxpresDbDataframeAccessor

  #27 opened 5 years ago by russHyde
  0

• Warning in metap::sumz(p_vals): Some studies omitted

  #24 opened 5 years ago by russHyde
  2

• p-value = 0 bug when summarising z-scores that are very negative

  #25 opened 5 years ago by russHyde
  1

• use `validity = function(x) my_validity_fn(x)` rather than `validity = my_validity_fn`

  #21 opened 5 years ago by russHyde
  1

• rewrite to work with a collapsed all-gene database

  #1 opened 5 years ago by russHyde
  5

• replace [overwrite/rewrite]_in_bunzip2 with overwrite and rewrite arguments

  #11 opened 5 years ago by russHyde
  0

• rewrite: drop mutate_, filter_, group_by_ etc

  #7 opened 5 years ago by russHyde
  3

• correlation-filtering should not apply when correlation is NA

  #12 opened 5 years ago by russHyde
  2

• correlation filtering is futile in modern coxpresdb databases => drop it

  #15 opened 5 years ago by russHyde
  1

• remove dependence on purrr

  #13 opened 5 years ago by russHyde
  1

• Like, dude, where's the README?

  #4 opened 5 years ago by russHyde
  0

• generalise the input statistics: allow correlation-coefficients as input

  #2 opened 6 years ago by russHyde
  1

• rewrite to use *.zip rather than *.tar.bz2

  #3 opened 5 years ago by russHyde
  1