NIfTI_Converter
Convert (ima/mha/mnc) file formats to the universally accepted NIfTI format for Brain MRI.
Documentation and Support
To run: $>python3 converter.py -i DICOM -o NIfTI
-i: input DICOM Folder(.ima)/MetaImage(.mha)/MINC(.mnc)
-o: specify output directory (optional)
-f: if whole folder is to be converted <True/False> (optional)
Examples
Example1: $>python3 converter.py -i DICOM
Example2: $>python3 converter.py -i subject04_t1w_p4.mnc.gz -o Subject4
Example3: $>python3 converter.py -i SimTumor00T_T1.mha -o TumorSim
Example4: $>python3 converter.py -i Batch3_tumorsim -o InNIfTI -f True
Required Libraries
dicom2nifti (DICOM .ima) Tested Version: 2.1.7 nibabel (MINC .mnc) Tested Version: 2.5.0 SimpleITK (MetaImage .mha) Tested Version: 1.2.2
Sample Files
DICOM: NCIGT Intra-operative MRT Glioma Resection MINC: BrainWeb MetaImage: TumorSim