Pinned Repositories
3Dprintneurons
docker-stacks-returned
Some python functions to supplement the NEURON python module
docker-streamlit-app
Run streamlit web application, test and deploy to a cloud service (GCP, AWS, Heroku)
jit_hub
Single neuronal models encoded in python language numba speed up. Note model waveforms are returned in Neo Format and model currents and voltages are represented with quantities units.
ScienceAccess
Large collections of big words and big concepts are hard to read. Scientists share ideas using large collections of words. We machine read scientific documents in an effort to compare writers with each other, and to promote simpler writing.
ScienceAccessibility
Analysis of accessibility of science writing.
SpikingNeuralNetworks.jl
Julia Spiking Neural Network Simulator
SpikingNeuralNetworks_.jl
Julia has enough tools to support fitting spiking neural network models to data. Pythons slow speed necessitates calls to external simulators (two language problem) to do network simulation. As much as possible it would be nice to do fast, efficient data fitting of spike trains to network models in one language, lets try to do that here.
SpinnakerHippocampus
Assignments for an academic course
russelljjarvis's Repositories
russelljjarvis/SpikingNeuralNetworks_.jl
Julia has enough tools to support fitting spiking neural network models to data. Pythons slow speed necessitates calls to external simulators (two language problem) to do network simulation. As much as possible it would be nice to do fast, efficient data fitting of spike trains to network models in one language, lets try to do that here.
russelljjarvis/ScienceAccess
Large collections of big words and big concepts are hard to read. Scientists share ideas using large collections of words. We machine read scientific documents in an effort to compare writers with each other, and to promote simpler writing.
russelljjarvis/SpikingNeuralNetworks.jl
Julia Spiking Neural Network Simulator
russelljjarvis/ACnet2
Primary Auditory Cortex model by Dave Beeman
russelljjarvis/awesome-typst
Awesome Typst Links
russelljjarvis/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
russelljjarvis/Biosignals
General physiological experimentation in real-time
russelljjarvis/brian2-sims
russelljjarvis/Catch22.jl
Evaluate catch22 time-series features in Julia
russelljjarvis/chicv
A minimal and fully-customizable CV template for Typst.
russelljjarvis/CitizenSleepScience
Citizen Sleep Science Workflows
russelljjarvis/cse5cv-labs
Lab notebooks for CSE5CV
russelljjarvis/Detection-of-Depression-Using-Late-Fusion-of-Sequential-Actigraphy-Features
Analyzed time-series data (Depressjon) to detect depression from patient activity recorded via clinical actigraphy watches. Utilized features such as time domain, statistical metrics, and LSTM-extracted attributes.
russelljjarvis/Ecotones-Djaara
russelljjarvis/julia
Docker Official Image packaging for julia
russelljjarvis/modern-typst-resume
A modern typst resume template
russelljjarvis/Neural_Ensemble_Analysis
Graphical user interface (GUI) in MATLAB for analyzing neural ensembles. It is a flexible tool for analyze the population activity from neural circuits from calcium imaging or multi-electrode arrays.
russelljjarvis/obsidian-todoist-plugin
Interact with todoist and projects in general
russelljjarvis/Odesa.jl-1
Experimental build of Odesa in julia
russelljjarvis/ODM
A command line toolkit to generate maps, point clouds, 3D models and DEMs from drone, balloon or kite images. 📷
russelljjarvis/OSGenome
An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
russelljjarvis/russelljjarvis
russelljjarvis/SGtSNEpi.jl
Julia bindings to SG-t-SNE-Π
russelljjarvis/SNNExamples
Collection of examples from the JuliaSNN organization
russelljjarvis/SNNUtils
Useful tools to analyse spiking neural network simulations
russelljjarvis/spike2vec
Pre-print doc at first fading into full code repository.
russelljjarvis/Spike2Vec.jl
High throughput spiking simulations with lower tech debt in Julia, including GPU backends
russelljjarvis/SpikeTime
russelljjarvis/SpikeTimes.jl
russelljjarvis/TrainSpikingNet.jl
train a spiking recurrent neural network