Pinned Repositories
3Dprintneurons
docker-stacks-returned
Some python functions to supplement the NEURON python module
docker-streamlit-app
Run streamlit web application, test and deploy to a cloud service (GCP, AWS, Heroku)
jit_hub
Single neuronal models encoded in python language numba speed up. Note model waveforms are returned in Neo Format and model currents and voltages are represented with quantities units.
ScienceAccess
Large collections of big words and big concepts are hard to read. Scientists share ideas using large collections of words. We machine read scientific documents in an effort to compare writers with each other, and to promote simpler writing.
ScienceAccessibility
Analysis of accessibility of science writing.
SpikingNeuralNetworks.jl
Julia Spiking Neural Network Simulator
SpikingNeuralNetworks_.jl
Julia has enough tools to support fitting spiking neural network models to data. Pythons slow speed necessitates calls to external simulators (two language problem) to do network simulation. As much as possible it would be nice to do fast, efficient data fitting of spike trains to network models in one language, lets try to do that here.
SpinnakerHippocampus
Assignments for an academic course
russelljjarvis's Repositories
russelljjarvis/SpikingNeuralNetworks_.jl
Julia has enough tools to support fitting spiking neural network models to data. Pythons slow speed necessitates calls to external simulators (two language problem) to do network simulation. As much as possible it would be nice to do fast, efficient data fitting of spike trains to network models in one language, lets try to do that here.
russelljjarvis/ScienceAccess
Large collections of big words and big concepts are hard to read. Scientists share ideas using large collections of words. We machine read scientific documents in an effort to compare writers with each other, and to promote simpler writing.
russelljjarvis/SpikingNeuralNetworks.jl
Julia Spiking Neural Network Simulator
russelljjarvis/2022-11_brainhack_DetecSpikMotifs
2022-11_brainhack_DetecSpikMotifs: Automatic detection of spiking motifs in neurobiological data. This project aims to develop a method for the automated detection of repeating spiking motifs, possibly noisy, in ongoing activity.
russelljjarvis/ACnet2
Primary Auditory Cortex model by Dave Beeman
russelljjarvis/allen_v1
russelljjarvis/awesome-typst
Awesome Typst Links
russelljjarvis/Biosignals
General physiological experimentation in real-time
russelljjarvis/bmtk
Brain Modeling Toolkit
russelljjarvis/bmtk_allen_movie_to_LGN_spikes
russelljjarvis/brian2-sims
russelljjarvis/Catch22.jl
Evaluate catch22 time-series features in Julia
russelljjarvis/Conductor.jl
Choo-choo
russelljjarvis/distributedActivity
russelljjarvis/julia
Docker Official Image packaging for julia
russelljjarvis/NatureStewards
russelljjarvis/Neural_Ensemble_Analysis
Graphical user interface (GUI) in MATLAB for analyzing neural ensembles. It is a flexible tool for analyze the population activity from neural circuits from calcium imaging or multi-electrode arrays.
russelljjarvis/obsidian-todoist-plugin
Interact with todoist and projects in general
russelljjarvis/Odesa.jl-1
Experimental build of Odesa in julia
russelljjarvis/ODM
A command line toolkit to generate maps, point clouds, 3D models and DEMs from drone, balloon or kite images. 📷
russelljjarvis/OSGenome
An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
russelljjarvis/russelljjarvis
russelljjarvis/SGtSNEpi.jl
Julia bindings to SG-t-SNE-Π
russelljjarvis/spike2vec
Pre-print doc at first fading into full code repository.
russelljjarvis/Spike2Vec.jl
High throughput spiking simulations with lower tech debt in Julia, including GPU backends
russelljjarvis/SpikeTime
russelljjarvis/SpikeTimes.jl
russelljjarvis/TrainSpikingNet.jl
train a spiking recurrent neural network
russelljjarvis/undr
Get your data down UNDR.
russelljjarvis/v1_project
Code for creating a GPU-accelerated model of the mouse primary visual cortex