BIIGLE
The Bio-Image Indexing and Graphical Labelling Environment (BIIGLE) is a web service for the efficient and rapid annotation of still images and videos. Read the paper or take a look at the manual.
BIIGLE is available at biigle.de.
Installation
BIIGLE requires Docker and Docker Compose to run.
For Production
Head over to biigle/distribution to configure and build your production setup.
For Development
Take a look at DEVELOPING.md for a detailed explanation on how to develop BIIGLE.
Versions
Although BIIGLE versions and BIIGLE module versions look like semantic versioning, they are not. Only the most recent versions are compatible with each other. Patch versions are mostly backwards compatible, though.
References
Reference publications that you should cite if you use BIIGLE for one of your studies.
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BIIGLE 2.0 Langenkämper, D., Zurowietz, M., Schoening, T., & Nattkemper, T. W. (2017). Biigle 2.0-browsing and annotating large marine image collections. Frontiers in Marine Science, 4, 83. doi:
10.3389/fmars.2017.00083 -
Laser Point Detection Schoening, T., Kuhn, T., Bergmann, M., & Nattkemper, T. W. (2015). DELPHI—fast and adaptive computational laser point detection and visual footprint quantification for arbitrary underwater image collections. Frontiers in Marine Science, 2, 20. doi:
10.3389/fmars.2015.00020 -
MAIA Zurowietz, M., Langenkämper, D., Hosking, B., Ruhl, H. A., & Nattkemper, T. W. (2018). MAIA—A machine learning assisted image annotation method for environmental monitoring and exploration. PloS one, 13(11), e0207498. doi:
10.1371/journal.pone.0207498 -
Video Object Tracking Lukezic, A., Vojir, T., ˇCehovin Zajc, L., Matas, J., & Kristan, M. (2017). Discriminative correlation filter with channel and spatial reliability. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (pp. 6309-6318). doi:
10.1109/CVPR.2017.515
Contributions and bug reports
Contributions to BIIGLE are always welcome. Check out CONTRIBUTING.md to get started.
Security Vulnerabilities
If you discover a security vulnerability within BIIGLE, please send an email to the BIIGLE team via info@biigle.de. All security vulnerabilities will be promptly addressed.