Pinned Repositories
EBAME6-Strain
EBAME 6 - Strainberry tutorial
flopp
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
GAM-NGS
Genomic Assemblies Merger for NGS
kickstart.nvim
kmtricks
modular k-mer count matrix and Bloom filter construction for large read collections
kseqpp
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
metaMDBG
MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
muset
strainberry
Automated strain separation of low-complexity metagenomes
strainberry-analyses
Snakemake workflows to generate main tables/figures of Strainberry manuscript
rvicedomini's Repositories
rvicedomini/strainberry
Automated strain separation of low-complexity metagenomes
rvicedomini/muset
rvicedomini/strainberry-analyses
Snakemake workflows to generate main tables/figures of Strainberry manuscript
rvicedomini/EBAME6-Strain
EBAME 6 - Strainberry tutorial
rvicedomini/flopp
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
rvicedomini/GAM-NGS
Genomic Assemblies Merger for NGS
rvicedomini/kickstart.nvim
rvicedomini/kmtricks
modular k-mer count matrix and Bloom filter construction for large read collections
rvicedomini/kseqpp
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
rvicedomini/metaMDBG
MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
rvicedomini/rvicedomini.github.io
rvicedomini/whatshap
Read-based phasing of genomic variants, also called haplotype assembly
rvicedomini/pthash
Fast and compact minimal perfect hash functions in C++.
rvicedomini/sshash
A compressed, associative, exact, and weighted dictionary for k-mers.