Pinned Repositories
GenomeAssembly
Pipelines for assembling genomes and doing QC
genomeDB_toolkit
Tools for managing local versions of large hybrid databases of public and private genomes. Specifically for bacteria/archaea.
GenomeVis
Tools for phylogenomic visualizations
haneylab-bugaboo
Scripts/protocols for setting up shared tools and data on the WestGrid bugaboo server.
LabScripts
ont-plasmid-mapper
Scripts for aligning ONT reads to plasmids
PhyloTools
collection of scripts used for phylogenetics analysis
PyParanoid
Rapid and scalable homolog identification for bacterial genomes
python-deepdive
Python Deep Dive Course - Accompanying Materials
ryanmelnyk's Repositories
ryanmelnyk/PyParanoid
Rapid and scalable homolog identification for bacterial genomes
ryanmelnyk/GenomeAssembly
Pipelines for assembling genomes and doing QC
ryanmelnyk/genomeDB_toolkit
Tools for managing local versions of large hybrid databases of public and private genomes. Specifically for bacteria/archaea.
ryanmelnyk/GenomeVis
Tools for phylogenomic visualizations
ryanmelnyk/haneylab-bugaboo
Scripts/protocols for setting up shared tools and data on the WestGrid bugaboo server.
ryanmelnyk/LabScripts
ryanmelnyk/ont-plasmid-mapper
Scripts for aligning ONT reads to plasmids
ryanmelnyk/PhyloTools
collection of scripts used for phylogenetics analysis
ryanmelnyk/python-deepdive
Python Deep Dive Course - Accompanying Materials
ryanmelnyk/ryanmelnyk.github.io
ryanmelnyk/genome-clusters
Nextflow pipeline for QCing, clustering, and classifying large numbers of bacterial genomes
ryanmelnyk/genome2asv
A pipeline for extracting ASVs from genomes for matching microbiome data with reference isolates
ryanmelnyk/STAMP_Pipeline
Pipeline for processing barcode reads for STAMP project