ryanpeek

PhD in aquatic ecology / conservation genomics. Researcher & data scientist at UC Davis. CA drought resilience coordinator w CDFW, rstats nerd

Center for Watershed Sciences, UC Davishttps://watershed.ucdavis.edu/

Pinned Repositories

2021-03-08-asu-online
ASU Data Carpentry geospatial workshop
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aggiedown
An R Markdown template using the bookdown package for preparing a PhD thesis at the University of California Davis
Language:TeX16 6 148
cws_code_club
DeBugging Buddies
Language:JavaScript20
mapping-in-R-workshop
Mapping in R workshop demonstrating how to use R/ RStudio to work with spatial data for mapping and visualization.
Language:R8 3 02
markdown_cv
A nice Rmarkdown template for a CV, courtesy of svmiller's template (http://svmiller.com/blog/2016/03/svm-r-markdown-cv/)
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radseq
RADSeq & RAPTURE code and steps
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rmarkdown_notebook_demo
demo_Rmarkdown_RNotebook for Davis R-Users Group
Language:HTML3 2 01
ryanpeek.github.io
repo for personal webpage
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spatiallite_demo
Installing using spatiallite on a MacOSX
Language:R4 4 01
svm-r-markdown-templates
I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi I share them here.
Language:TeX2 2 00

ryanpeek's Repositories

ryanpeek/aggiedown
An R Markdown template using the bookdown package for preparing a PhD thesis at the University of California Davis
Language:TeX16 6 148
ryanpeek/ryanpeek.github.io
repo for personal webpage
Language:HTML6 2 01
ryanpeek/canv_aptf
Updated blogdown version of the CA/NV Amphibian Populations Task Force website
Language:HTML1 2 0
ryanpeek/citation_library
bib file for citations
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ryanpeek/ffm_targets
Language:R11
ryanpeek/r_tidbits
packages, code snippets, and R things that may or may not gather dust
Language:R1 3 00
ryanpeek/2022_30-day-map-challenge
30daymap challenge
Language:R
ryanpeek/2023_30-day-map-challenge
30-day map challenge
Language:R
ryanpeek/2024_targets_demo
targets demo with USGS gages
Language:R
ryanpeek/arcadia_demo
ryanpeek/basemap-fork
forked from basemaps
ryanpeek/drought_ca_monitoring
A {targets} based project to pull US Drought Monitor data and plot by county, huc, or climate hub
Language:R
ryanpeek/frog_survey_protocols
Frog survey protocols
ryanpeek/precip_comparison
Comparison of meterologic conditions across time/place
Language:R
ryanpeek/r_officehours
Various problems answered/tested as part of R4DS office hours, and D-RUG office hours
Language:R2 0
ryanpeek/r_with_snakemake
snakemake workflow using R scripts to pull precipitation/climate data for Davis
Language:R
ryanpeek/rabo-workshop
A workshop on the ecology of R. boylii.
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ryanpeek/rabo_bd_paper
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ryanpeek/rabo_plasticity
Analysis of plasticity in breeding timing of hydrologic spawning cues for the foothill yellow-legged frog (Rana boylii) from Sierran streams. Based on field data collected through Center for Watershed Sciences. Part of a manuscript in progress. Please contact if you'd like to use the data.
Language:R1
ryanpeek/rabo_snakemake
Snakemake workflow for RAD novaseq data
Language:R
ryanpeek/radseq_scripts
radseq/rapture bash scripts for demultiplex, alignment and basics.
Language:Shell
ryanpeek/radseq_snakemake
Snakemake scaffold for RADSEQ
Language:Python
ryanpeek/rap_repo_template
Template repo
ryanpeek/sticklebaits
Stickle bait capture
Language:Python
ryanpeek/stream_drought_deficit
Stream drought deficit based on papers by D. Dralle. Pilot/testing ground for analyses of streams w amphibian conservation importance.
Language:R
ryanpeek/ucm_2022_dtsm
drought talk
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ryanpeek/using-geoparquet-in-R
Quick slide deck on using geoparquet in R
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ryanpeek/van_norden_aquabio
repository for Van Norden pre/post restoration aquatic bio. monitoring data
Language:R
ryanpeek/water-is-life
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ryanpeek/wateRshedTools
watershed utils for water year day
Language:R1