Pinned Repositories
alien-attackers
A React-Express browser game
demux_stats_plots
Create plots for Illumina bcl2fastq Stats.json
minimal-python-remote-multiprocessing
A minimal example of the Multiprocessing remote manager in Python3
tidyid
Sample identifiers that are easy to read and write
jetstream
Workflow management system written as a pure Python package and command-line utility. It supports complex workflows modeled as directed- acyclic graphs (DAGs), and execution on batch schedulers
phoenix
Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38
ryanrichholt's Repositories
ryanrichholt/alien-attackers
A React-Express browser game
ryanrichholt/minimal-python-remote-multiprocessing
A minimal example of the Multiprocessing remote manager in Python3
ryanrichholt/demux_stats_plots
Create plots for Illumina bcl2fastq Stats.json
ryanrichholt/tidyid
Sample identifiers that are easy to read and write
ryanrichholt/aws-parallelcluster
AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.
ryanrichholt/bobs-burgers-memory-game
ryanrichholt/confuse
painless YAML config files for Python
ryanrichholt/Conpair
Concordance and contamination estimator for tumor–normal pairs
ryanrichholt/dump-object-updates-to-disk
A short example of a method for periodically saving object updates to the disk for access by other programs
ryanrichholt/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
ryanrichholt/leap-day
Leap day is a Jekyll theme for GitHub Pages
ryanrichholt/MemTest
Tiny tool for testing java -Xm... options
ryanrichholt/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
ryanrichholt/phaser
phasing and Allele Specific Expression from RNA-seq
ryanrichholt/pyQUILTS
Rebuilding QUILTS in Python.
ryanrichholt/python-daemon
Python daemonizer for Unix, Linux and OS X
ryanrichholt/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
ryanrichholt/seurat
R toolkit for single cell genomics
ryanrichholt/snpSniffer
Tool for checking genotype concordance between multiple assays
ryanrichholt/SpliceAI
A deep learning-based tool to identify splice variants
ryanrichholt/styleguide
Style guides for Google-originated open-source projects
ryanrichholt/tempstore
A simple container for handling multiple tempfiles
ryanrichholt/thegame_backend
ryanrichholt/thegame_frontend
ryanrichholt/tidyss
A collection of tools for making better sample sheets